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Report for CCDS27264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27264.1 Public Mus musculus 14 Fndc3a 23 108 98 CCDS HistoryNCBI Gene:319448Re-query CCDS DB by CCDS ID:27264.1Re-query CCDS DB by GeneID:319448See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27264.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089017.11 ENSMUSP00000086411.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089017.11Link to Ensembl Protein Viewer:ENSMUSP00000086411.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089017Re-query CCDS DB by Protein ID:ENSMUSP00000086411
Original member NCBI NM_207636.2 NP_997519.2 Updated not alive Link to Nucleotide Sequence:NM_207636.2Link to Protein Sequence:NP_997519.2Re-query CCDS DB by Nucleotide ID:NM_207636Re-query CCDS DB by Protein ID:NP_997519
Current member NCBI NM_207636.3 NP_997519.2 Accepted alive Link to Nucleotide Sequence:NM_207636.3Link to Protein Sequence:NP_997519.2Re-query CCDS DB by Nucleotide ID:NM_207636Re-query CCDS DB by Protein ID:NP_997519Link to BLAST:NP_997519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997519.2 1198 Q8BX90 1198 100% 0 0

Chromosomal Locations for CCDS 27264.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 72540167 72540481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72552472 72552599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72553382 72553548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72556147 72556359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72556458 72556741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72556839 72556988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72557634 72557747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72558980 72559155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72559242 72559347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72561598 72561716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72563484 72563552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72564606 72564744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72566097 72566183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72567310 72567484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72568842 72568966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72571435 72571488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72573290 72573428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72574352 72574411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72574523 72574680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72582957 72583015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72584575 72584844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72589754 72589991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72599066 72599142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72652016 72652091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72683634 72683732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3597 nt):
ATGGCAGAACACCCGCCTTTGCTAGACACAGCTCAGATTTTAAGTAGCGACATCTCTCTTCTGTCTGCCC
CTATTGTAAGTGCAGATGGAACACAACAGGTTATTCTGGTACAGGTTAATCCAGGGGAAGCCTTTACGAT
AAGAAGAGAAGATGGACAGTTTCAGTGCATTACAGGTCCTGCTCAGGTTCCAATGATGTCCCCAAATGGT
TCCGTGCCTCCTATTTATGTGCCTCCTGGATATGCCCCACAGGTTATCGAAGACAATGGTGTTCGGAGAG
TCGTTGTGGTTCCGCAATCACCAGAATTTCATCCTGGTGGCCACACAGTTATCCACCGCTCCCCACATCC
TCCTCTGCCTGGTTTCATTCCTGTCCCAACCATGATGCCCCCTCCACCACGCCATATGTACTCACCAGTG
ACTGGAGCTGGCGACATGGCAACGCAGTATATGCCGCAGTATCAGTCTTCACAAGTATATGCAGATGTAG
ATGCCCACTCTACACACGGCAGGTCCAACTTCAGAGATGAAAGATCTAGTAAAACATATGAACGCTTGCA
GAAAAAATTAAAGGATCGCCAAGGAACACAGAAAGATAAAATGAGCAGCCCCCCACCATCACCGCAGAAA
TGCCCTTCTCCCATAAGTGAACACAATGGACTCATAAAAGGGCAGAACGCCAGTGGTGGGAACACAGGAT
CTGCAAGAAACAGATCGGGGCGTGGGAGAAGCTGTACACAAGTTGACCCGGAAATGGAAGAAAAAGATGA
AGAAACTAAAGCATTTGAAGCATTTCTTTCCAACATTGTCAAGCCAGTGGCCTCAGACATTCAGGCAAGG
ACTGTCCTGCTCACCTGGTCGCCACCATCCAGCTTCATTAACGGCGAAGTGAACGAGACAGCTGTACCAG
AGCTCTTCAATTATGAAGTCCTGGTTTCCAGCACTGGGAAGGAAGGGAAATACAGAAGTGTTTATATAGG
AGAAGAAACAAGTGTCACTTTAAATGATCTCAAACCAGCCACAGATTACCATGCAAAAGTACAGGCAGAG
TCCAATTCAATCAAGGGAATTCCTTCAGAAGCGGAAAGCTTTACGACCTTAAGCTGTGAGCCTGATCCCC
CCAATGCACCAAGAATAGCCAACCGGACCAAAAATTCACTCACCTTGCAGTGGAAGGCACCTAGTGACAA
TGGTTCTAAAATCCAAAGTTTTATTTTAGAATGGGATGAAGGGAAAGGAAATGGAGAATTCTGTCAGTGT
TACATGGGCTCACAGAAGCAATTTAAAATTACCAAACTCTCACCAGCAATGGGTTGTAAATTTAGATTAT
CAGCCAAAAATGACTATGGTGTAAGTGATTTTAGTGAAGAGGTCCTGTACTACACCTCAGGCTGTGCCCC
TTCTGTCCCCGCAAGTCCTGTGTTGACCAAGGCTGGAGTTACTTGGCTGTCCCTACAGTGGACTAAGCCC
TCAGGAACACCATCAGATGAAGGGATTTCTTACATTTTAGAGATGGAAGAGGAAACATCAGGCTATGGCT
TTAAGCCGAAATATGATGGAGAAGATCTTGCTTACACAGTGAAAAATCTGAGACGAAGTACAAAGTATAA
ATTTAAGGTCATTGCTTATAACTCAGAAGGTAAAAGCAATCCTAGCGAAGTGGTGGAATTCAGTACCTGC
CCTGATAAACCAGGAGTACCTGTGAAGCCTTCAGTTAAAGGGAAGATACACTCGCACGGCTTTAAAATTA
CTTGGGATCCACCAAAAGACAATGGAGGGGCACCCATCAATAAGTACGTGGTGGAGATGGCAGAAGGTTC
TAATGGAAACAAATGGGATATGATCTACAGTGGCACTACCAGGGAACATCTTTGTGACCGGCTGACTCCA
GGCTGCTATTACCGCTTACGGGTTTACTGCATTAGTGACGGAGGGCAGAGTGCGGTCTCTGAATCTTTAC
TAGTACAGACTCCAGCTGTGCCTCCTGGCCCATGCCTCCCTCCCAGGTTACAGGGTAGACCCAAAGCAAA
AGAAATACAGTTACGATGGGGACCTCCTCAGGTTGATGGTGGATCACCCATTTCCTGTTATGCAGTAGAA
ATGACTCCTGCAGATAAAGATGAGCCCAGAGACGTTTACCAAGGTTCTGAAGTGGAGTGTACAGTGGGCA
GCCTTCTTCCTGGAAAGACGTACAGCTTCAGACTTCGTGCAGCAAACAGAATAGGGTTTGGACCATTTTC
AGAAAAATACGATATCACTACAGCTCCTGGGCCACCAGACCAATGCAGACCCCCTCAAGTGACATGCAGA
TCTGCAACTTGTGCACAAGTGAATTGGGAGATTCCTTTGAGTAATGGGACTGACGTCACTGAGTACCGGC
TGGAATGGGGAGGAGTTGAAGGAAGTATGCAGATGTGTTACTGTGGGCCTGGCCTCAGTTGTGAATTAAA
AGGACTTTCACCAGCTACTACCTATTACTGCAGAGTCCAGGCTATGAGTGTTGTAGGTGCAGGTCCTTTC
AGTGAAGTTGTTGCCTGTGTGACTCCACCGTCAGTTCCTGCCATTGTGACTTGTCTTCAAGAAATAAGTG
ATGATGATATAGAATACCCCCATTACTCACCCTCTACCTGCCTTGCAATTAGCTGGAAAGAGCCTTATGA
CCATGGCTCAGAAATCCTTGCCTACAGCATAGACCTCGGAGATAAGCAGCCTTTGACAGTGGGAAAGATG
ACAAGCTATATCATAGACAGTTTGCAACCAGATACAACATACAGAATACGAATTCAAGCCTTGAATAGCC
TTGGAGCTGGGCCTTTCAGCCATACAATTAAATTAAAAACTAAGCCCCTTCCCCCTGATCCACCTCGGCT
GGAATGTGTTGCCTTTAACCACCAGAACCTTAAGCTTAAGTGGGGAGAAGGAACTCCAAAGACGTTGTCC
ACAGATGCTGTTCAGTACCACCTTCAGATGGAAGATAGGAATGGAAGGTTTGTCTCCCTGTACAGAGGGC
CTTGTCATACATATAAAGTACAAAGGCTCAGTGAGTCCACGTCCTACAAGTTCTGCATTCAAGCTTGTAA
TGAAGCTGGGGAAGGTCCTCTCTCCCAAGAGTATGTTTTCACCACTCCAAAATCTCTTCCAGCTGCCTTG
AAAGCCCCCAAAATAGAGAAAATAAATGATCACATTTGTGAAATTACATGGGAATATTTACAGCCAATGA
AGGGTGACCCAGTTATTTATAATCTTCAAGTTATGGTGGGAAAAGATTCAGAATTCAAGCAGATTTACAA
GGGCCCTGATACTTCATTCCGGTATTCCAGCCTTCAGCTGAATTGTGAGTATCGATTTCGAGTGTGTGCC
ATTCGCCAATGCCAAGACCCTACAGGGCATCAGGACCTGGTAGGTCCCTACAGCACCACAGTGTTCTTCA
TCTCCCAGAGGACAGAACCGCCGGCCAGCAGCAACAAAGACAGTGTGGACAGTGCCCGGACCCGGCGTAC
TCTAAGTGACGAGCAGTGTGCTGCAGTCATCCTGGTGGTGTTTGCTTTTTTCTCCATTCTGATTGCCTTT
ATCATTCAGTACTTTGTAATCAAGTGA

Translation (1198 aa):
MAEHPPLLDTAQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNG
SVPPIYVPPGYAPQVIEDNGVRRVVVVPQSPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPV
TGAGDMATQYMPQYQSSQVYADVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPPSPQK
CPSPISEHNGLIKGQNASGGNTGSARNRSGRGRSCTQVDPEMEEKDEETKAFEAFLSNIVKPVASDIQAR
TVLLTWSPPSSFINGEVNETAVPELFNYEVLVSSTGKEGKYRSVYIGEETSVTLNDLKPATDYHAKVQAE
SNSIKGIPSEAESFTTLSCEPDPPNAPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQC
YMGSQKQFKITKLSPAMGCKFRLSAKNDYGVSDFSEEVLYYTSGCAPSVPASPVLTKAGVTWLSLQWTKP
SGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFSTC
PDKPGVPVKPSVKGKIHSHGFKITWDPPKDNGGAPINKYVVEMAEGSNGNKWDMIYSGTTREHLCDRLTP
GCYYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPQVDGGSPISCYAVE
MTPADKDEPRDVYQGSEVECTVGSLLPGKTYSFRLRAANRIGFGPFSEKYDITTAPGPPDQCRPPQVTCR
SATCAQVNWEIPLSNGTDVTEYRLEWGGVEGSMQMCYCGPGLSCELKGLSPATTYYCRVQAMSVVGAGPF
SEVVACVTPPSVPAIVTCLQEISDDDIEYPHYSPSTCLAISWKEPYDHGSEILAYSIDLGDKQPLTVGKM
TSYIIDSLQPDTTYRIRIQALNSLGAGPFSHTIKLKTKPLPPDPPRLECVAFNHQNLKLKWGEGTPKTLS
TDAVQYHLQMEDRNGRFVSLYRGPCHTYKVQRLSESTSYKFCIQACNEAGEGPLSQEYVFTTPKSLPAAL
KAPKIEKINDHICEITWEYLQPMKGDPVIYNLQVMVGKDSEFKQIYKGPDTSFRYSSLQLNCEYRFRVCA
IRQCQDPTGHQDLVGPYSTTVFFISQRTEPPASSNKDSVDSARTRRTLSDEQCAAVILVVFAFFSILIAF
IIQYFVIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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