NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27245.1 Public Mus musculus 14 Pebp4 23 108 98 CCDS HistoryNCBI Gene:73523Re-query CCDS DB by CCDS ID:27245.1Re-query CCDS DB by GeneID:73523See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022678.4 ENSMUSP00000022678.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022678.4Link to Ensembl Protein Viewer:ENSMUSP00000022678.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022678Re-query CCDS DB by Protein ID:ENSMUSP00000022678
Original member Current member NCBI NM_028560.4 NP_082836.2 Accepted alive Link to Nucleotide Sequence:NM_028560.4Link to Protein Sequence:NP_082836.2Re-query CCDS DB by Nucleotide ID:NM_028560Re-query CCDS DB by Protein ID:NP_082836Link to BLAST:NP_082836.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082836.2 242 Q9D9G2 242 100% 0 0

Chromosomal Locations for CCDS 27245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69847495 69847691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69851628 69851754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69963440 69963538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70045877 70045922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70048359 70048472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70059597 70059742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGACAATGAAGCTGGTCGCAGCAGCACTTTGCTTGAGCCTCCTTGCAGCCGGCCTGTGGGTGGGCCTCT
CATTGACAGCTGAGTCCATTGAAGAAGGGAAACCTGGAGGAGAGAAACCTGGAGGAGGGAAACCTGGAGG
CAGCGGACGAGGATGTTTTCTCCCACCACTGCCAAAAGAAGATGTTTCACTATGCAGGAACCTAGAAGTT
TTCTACATGGAGATGGGGAACATCAGCTGTAAAATTGTTCCTAAGTGCAATCTATACAGACAGAAGATCA
CGGCCTGGCAGGCGCCGATAGTCAAGTTCCACACGGCTTTGGATGGTGCGCTGTACCTGCTGGTAATGGT
GGATCCAGATGCCCCCAGCAGGTCTAACCCCGTGATGAAATACTGGAGACACTGGTTGGTGTCCAACATC
ACAGGTGCTGACATGAAAAGTGGGAGTATCCGTGGCAATGTACTATCAGACTACTCGCCGCCTACCCCAC
CGCCAGAAACTGGTCTACACCGCTACCAGTTCTTTGTCTACCTTCAGGGAGACAGAGACATTTCTCTCTC
AGTGGAAGAAAAGGCAGACTTAGGTGGTTGGAATCTGGACAAATTCCTGCAGCAATATGGGCTGAGAGAT
CCCGACACAAGCACCCAGTTCATGACTCAGTTTGACGAGGAACTGTCATCAGAGTTTGGTAGAATTAACG
ACGATCAAGAGCAATTCAATCAAAAATAA

Translation (242 aa):
MTMKLVAAALCLSLLAAGLWVGLSLTAESIEEGKPGGEKPGGGKPGGSGRGCFLPPLPKEDVSLCRNLEV
FYMEMGNISCKIVPKCNLYRQKITAWQAPIVKFHTALDGALYLLVMVDPDAPSRSNPVMKYWRHWLVSNI
TGADMKSGSIRGNVLSDYSPPTPPPETGLHRYQFFVYLQGDRDISLSVEEKADLGGWNLDKFLQQYGLRD
PDTSTQFMTQFDEELSSEFGRINDDQEQFNQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH