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Report for CCDS27232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27232.1 Public Mus musculus 14 Nefl 23 108 98 CCDS HistoryNCBI Gene:18039Re-query CCDS DB by CCDS ID:27232.1Re-query CCDS DB by GeneID:18039See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022639.7 ENSMUSP00000022639.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022639.7Link to Ensembl Protein Viewer:ENSMUSP00000022639.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022639Re-query CCDS DB by Protein ID:ENSMUSP00000022639
Original member Current member NCBI NM_010910.2 NP_035040.1 Accepted alive Link to Nucleotide Sequence:NM_010910.2Link to Protein Sequence:NP_035040.1Re-query CCDS DB by Nucleotide ID:NM_010910Re-query CCDS DB by Protein ID:NP_035040Link to BLAST:NP_035040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035040.1 543 P08551 543 100% 0 0

Chromosomal Locations for CCDS 27232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 68083963 68085009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 68085974 68086098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 68086487 68086806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 68087308 68087447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGAGTTCGTTCGGCTACGATCCGTACTTTTCGACCTCCTACAAGCGGCGCTATGTGGAGACGCCCCGGG
TGCACATCTCCAGCGTGCGCAGCGGCTACAGCACGGCGCGCTCCGCGTACTCCAGCTACTCCGCGCCGGT
CTCCTCCTCGCTGTCCGTGCGCCGCAGCTACTCGTCCAGCTCTGGCTCTTTGATGCCCAGCCTGGAGAAT
CTCGATCTGAGCCAGGTAGCCGCCATCAGCAACGACCTCAAGTCTATCCGCACACAAGAGAAGGCACAGC
TGCAGGACCTCAACGATCGCTTCGCCAGCTTCATCGAGCGCGTGCACGAGCTGGAGCAGCAGAACAAGGT
CCTGGAAGCCGAGCTGTTGGTGCTGCGCCAGAAACACTCTGAGCCTTCCCGCTTCCGCGCCCTGTACGAG
CAGGAGATCCGCGATCTGCGGCTGGCAGCGGAAGACGCCACTAACGAGAAGCAGGCGCTGCAGGGCGAGC
GCGAGGGGCTGGAGGAGACTCTGCGCAACCTGCAGGCTCGCTATGAGGAAGAAGTGCTGAGCCGCGAGGA
CGCCGAGGGCCGGCTGATGGAAGCGCGCAAAGGTGCGGATGAGGCCGCGCTCGCCCGCGCCGAGCTGGAG
AAGCGCATCGACAGCCTGATGGACGAGATAGCTTTCCTGAAGAAGGTGCACGAGGAAGAGATCGCCGAGC
TGCAGGCTCAGATCCAGTATGCTCAGATCTCCGTGGAGATGGACGTGTCCTCCAAGCCCGACCTCTCCGC
CGCTCTCAAGGACATCCGCGCTCAGTACGAGAAGCTGGCCGCCAAGAACATGCAGAACGCCGAAGAGTGG
TTCAAGAGCCGCTTCACCGTGCTAACCGAGAGCGCCGCCAAGAACACCGACGCTGTGCGCGCTGCCAAGG
ACGAGGTGTCGGAAAGCCGCCGCCTGCTCAAGGCTAAGACCCTGGAGATCGAAGCCTGCCGGGGTATGAA
CGAAGCTCTGGAGAAGCAGCTGCAGGAGCTAGAGGACAAGCAGAATGCAGACATTAGCGCCATGCAGGAC
ACAATCAACAAACTGGAGAATGAGCTGAGAAGCACGAAGAGCGAGATGGCCAGGTACCTGAAGGAGTACC
AGGACCTCCTCAATGTCAAGATGGCCTTGGACATCGAGATTGCAGCTTACAGAAAACTCTTGGAAGGCGA
AGAGACCAGGCTCAGTTTCACCAGCGTGGGTAGCATAACCAGCGGCTACTCTCAGAGCTCGCAGGTCTTC
GGCCGTTCTGCTTACAGTGGCTTGCAGAGCAGCTCCTACTTGATGTCTGCTCGCTCTTTCCCAGCCTACT
ATACCAGCCACGTCCAGGAAGAGCAGACAGAGGTCGAGGAGACCATTGAGGCTACGAAAGCTGAGGAGGC
CAAGGATGAGCCCCCCTCTGAAGGAGAAGCAGAAGAGGAGGAGAAGGAGAAAGAGGAGGGAGAGGAAGAG
GAAGGCGCTGAGGAGGAAGAAGCTGCCAAGGATGAGTCTGAAGACACAAAAGAAGAAGAAGAAGGTGGTG
AGGGTGAGGAGGAAGACACCAAAGAATCTGAAGAGGAAGAGAAGAAAGAGGAGAGTGCTGGAGAGGAGCA
GGTGGCTAAGAAGAAAGATTGA

Translation (543 aa):
MSSFGYDPYFSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLEN
LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYE
QEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELE
KRIDSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQNAEEW
FKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQD
TINKLENELRSTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQSSQVF
GRSAYSGLQSSSYLMSARSFPAYYTSHVQEEQTEVEETIEATKAEEAKDEPPSEGEAEEEEKEKEEGEEE
EGAEEEEAAKDESEDTKEEEEGGEGEEEDTKESEEEEKKEESAGEEQVAKKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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