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Report for CCDS27228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27228.1 Public Mus musculus 14 Ebf2 23 108 98 CCDS HistoryNCBI Gene:13592Re-query CCDS DB by CCDS ID:27228.1Re-query CCDS DB by GeneID:13592See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022637.13 ENSMUSP00000022637.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022637.13Link to Ensembl Protein Viewer:ENSMUSP00000022637.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022637Re-query CCDS DB by Protein ID:ENSMUSP00000022637
Original member Current member EBI ENSMUST00000176161.7 ENSMUSP00000135500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176161.7Link to Ensembl Protein Viewer:ENSMUSP00000135500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176161Re-query CCDS DB by Protein ID:ENSMUSP00000135500
Original member Current member EBI ENSMUST00000176029.1 ENSMUSP00000135782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176029.1Link to Ensembl Protein Viewer:ENSMUSP00000135782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176029Re-query CCDS DB by Protein ID:ENSMUSP00000135782
Original member Current member NCBI NM_001276387.1 NP_001263316.1 Accepted alive Link to Nucleotide Sequence:NM_001276387.1Link to Protein Sequence:NP_001263316.1Re-query CCDS DB by Nucleotide ID:NM_001276387Re-query CCDS DB by Protein ID:NP_001263316Link to BLAST:NP_001263316.1
Original member Current member NCBI NM_001360202.1 NP_001347131.1 Accepted alive Link to Nucleotide Sequence:NM_001360202.1Link to Protein Sequence:NP_001347131.1Re-query CCDS DB by Nucleotide ID:NM_001360202Re-query CCDS DB by Protein ID:NP_001347131Link to BLAST:NP_001347131.1
Original member Current member NCBI NM_010095.6 NP_034225.1 Accepted alive Link to Nucleotide Sequence:NM_010095.6Link to Protein Sequence:NP_034225.1Re-query CCDS DB by Nucleotide ID:NM_010095Re-query CCDS DB by Protein ID:NP_034225Link to BLAST:NP_034225.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263316.1 575 O08792 575 100% 0 0
NP_001347131.1 575 O08792 575 100% 0 0
NP_034225.1 575 O08792 575 100% 0 0

Chromosomal Locations for CCDS 27228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 67235135 67235265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67237449 67237605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67238549 67238612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67238935 67238990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67239418 67239491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67247011 67247079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67371693 67371774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67387878 67387995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67389616 67389746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67390440 67390566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67410013 67410101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67411664 67411729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67411812 67411989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67414363 67414548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67423953 67424120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67428091 67428122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGTTTGGGATTCAAGATACGCTAGGAAGAGGACCAGCTCTGAAAGACAAGTCGCTGGGTGCCGAGATGG
ATTCGGTCAGGTCCTGGGTCCGGAATGTCGGCGTGGTGGACGCCAATGTCGCGGCTCAGAGCGGAGTTGC
TCTGTCCCGGGCCCATTTTGAAAAGCAACCTCCTTCAAACTTGAGGAAATCCAACTTCTTTCATTTTGTC
CTGGCGCTCTACGACAGGCAGGGACAGCCGGTGGAGATTGAGCGCACAGCCTTCGTGGACTTTGTGGAGA
ATGACAAAGAGCAAGGCAATGAGAAGACCAACAATGGTACTCACTACAAGTTACAGCTCCTTTACAGCAA
CGGTGTCCGCACGGAGCAGGACCTGTATGTCAGGCTCATCGACTCTGTCACCAAACAGCCCATAGCCTAT
GAGGGACAGAATAAGAATCCCGAAATGTGCAGAGTTCTGCTGACACACGAGGTGATGTGCAGTCGATGCT
GTGAGAAGAAGAGCTGCGGGAACCGGAACGAGACCCCTTCAGACCCGGTCATCATCGACAGATTCTTTTT
AAAATTTTTCCTGAAGTGCAATCAGAATTGTTTGAAAACAGCGGGAAACCCAAGGGACATGAGGCGGTTC
CAGGTCGTGTTGTCCACAACAGTAAATGTGGATGGACATGTGCTGGCTGTTTCTGACAACATGTTTGTTC
ATAACAATTCTAAGCATGGAAGGAGAGCAAGAAGGCTTGACCCATCTGAAGCTACACCCTGCATCAAAGC
CATCAGCCCAAGTGAAGGCTGGACCACAGGAGGGGCCATGGTCATCATCATTGGTGACAACTTTTTTGAT
GGTCTCCAGGTTGTGTTTGGTACCATGCTTGTATGGAGTGAGCTCATAACCCCTCATGCCATCAGAGTAC
AGACCCCTCCCCGGCATATCCCTGGAGTTGTGGAAGTGACACTATCTTATAAATCCAAACAGTTCTGCAA
AGGAGCCCCGGGCAGGTTCATCTACACAGCCTTAAATGAACCCACCATAGACTATGGCTTCCAAAGATTG
CAGAAAGTCATCCCAAGGCACCCAGGTGACCCTGAGAGGCTAGCTAAGGAAATGCTGTTGAAAAGAGCTG
CGGACCTGGTGGAAGCCCTCTACGGCACACCACACAATAATCAGGACATCATTTTAAAGCGTGCTGCAGA
CATTGCTGAAGCCCTGTACAGTGTCCCCAGGAACCCCAGCCAGATTCCAGCTCTTTCCAGCTCCCCAGCT
CACAGCGGTATGATGGGTATCAACTCTTACGGCAGCCAGCTCGGCGTCAGCATTTCAGAGTCCACACAAG
GAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCAGCTCCACGCC
TCAGCAATCTAATTACAGCACCTCCAGCAACAGCATGAACGGCTACAGCAATGTTCCTATGGCCAACCTG
GGTGTGCCAGGATCCCCGGGATTTCTGAATGGCTCACCCACGGGCTCCCCATATGGAATCATGTCTTCAA
GCCCCACCGTGGGATCCTCCAGCACGTCCTCCATCCTCCCGTTCTCCTCTTCAGTTTTTCCTGCTGTCAA
ACAGAAGAGTGCCTTTGCCCCTGTCATCAGGCCCCAAGGCTCCCCATCGCCTGCCTGCTCCAGCGGCAAT
GGGAACGGATTCAGAGCCATGACAGGACTTGTTGTTCCCCCGATGTAA

Translation (575 aa):
MFGIQDTLGRGPALKDKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFV
LALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAY
EGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRF
QVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFD
GLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRL
QKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPA
HSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANL
GVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGN
GNGFRAMTGLVVPPM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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