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Report for CCDS27163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27163.1 Public Mus musculus 14 Micu2 23 108 98 CCDS HistoryNCBI Gene:68514Re-query CCDS DB by CCDS ID:27163.1Re-query CCDS DB by GeneID:68514See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022543.9 ENSMUSP00000022543.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022543.9Link to Ensembl Protein Viewer:ENSMUSP00000022543.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022543Re-query CCDS DB by Protein ID:ENSMUSP00000022543
Original member NCBI NM_028643.3 NP_082919.1 Updated not alive Link to Nucleotide Sequence:NM_028643.3Link to Protein Sequence:NP_082919.1Re-query CCDS DB by Nucleotide ID:NM_028643Re-query CCDS DB by Protein ID:NP_082919
Current member NCBI NM_028643.4 NP_082919.1 Accepted alive Link to Nucleotide Sequence:NM_028643.4Link to Protein Sequence:NP_082919.1Re-query CCDS DB by Nucleotide ID:NM_028643Re-query CCDS DB by Protein ID:NP_082919Link to BLAST:NP_082919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082919.1 432 Q8CD10 432 100% 0 0

Chromosomal Locations for CCDS 27163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 57917268 57917375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57918823 57918980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57919344 57919452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57923940 57924111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57927197 57927294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57932238 57932303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57943588 57943670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57945385 57945432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57954136 57954211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57954999 57955030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57971651 57971789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57999030 57999239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGCGGCGGCTGCGGGAAGAAGCGCTTGGCTGGCGGCCTGGGGCGGAAGGCTGCGGCGCGGGCTCGCGG
CCGGCCGACGAGCTGTGCCGACTCGCGGCCCTCTCGCAGCGGCTGTGGCCGGGGTAGCCCTGGCAGGCGC
AGGAGCGGCATGGCATCACGGCCGCGTGAAAGCAGCCGCGCGCGAGGGCTCCCGAACGGTGTCGGCGCAG
AAAAATTATTTGGGACCAATAGAGAAACTTTCTCTCCGCAAACAGCGGTTCATGCAGTTTTCATCCCTGG
AGCACGACGGAGAGTATTACATGACACCCCGAGACTTCCTCTTCTCAGTCATGTTTGAGCAAGTGGAGCG
TAAAACACTGGTCAAGAAGCTGGCAAAAAAGGATATCGAGGATGTACTGTCAGGAATCCAAACAGCACGC
TGTGGATCAACATTTTTTAGAGACCTGGGTGATAAAGGGGTAATTTCATATACCGAGTATCTTTTCTTGC
TTACAATCCTCACAAAACCTCACTCTGGGTTCCATGTTGCTTTTAAAATGCTGGATGTGGATGGGAATGA
GATGATCGAGAGGAAGGAGTTTGTTAAGCTGCAGAAGATCATAAGTAAACAAGATGGCTTCAAGACAGTG
AAGACTAATGAGACAGAATACCAGGACCCAACAGTGAAAGAGCCTGGCGTTAACACAACCCTTCAAGTGC
GTTTCTTTGGGAAAAGAGGAGAAAAAAAACTCCATTATAAAGAATTTCGAAGATTTATGGAAAATTTACA
AACAGAAGTTCAAGAAATGGAATTCCTTCAGTTCTCTAAAGGCCTGAATTTCATGAGAAAAGAAGACTTT
GCAGAATGGCTACTTTTCTTCACTAACACTGAAAATAAAGATATTTACTGGAGAAACGTGAGAGAAAAGT
TGTCAGTAGGAGAGAGCATTAGTTTGGATGAGTTCAAGTCCTTTTGCCATTTTACAACGCATTTGGAAGA
CTTTGCTATCGCCATGCAAATGTTTAGTTTAGCTCATCGCCCTGTGCGGCTGGCAGAGTTCAAGAGAGCT
GTGAAGGTAGCGACTGGACAGGAGCTCTCGGACAATCTTCTGGACACCGTCTTCAAGATCTTTGACCTGG
ACGGGGACGAGTGCCTCAGCCACGGCGAGTTCCTTGGGGTACTGAAAAACAGGATGCACCGAGGCTTATG
GGTGTCACAGCAGCAGAGTGTGCAAGAATACTGGAAGTGTGTGAAGAAGGAAAGCATCAAGGGAGTAAAG
GAAGCCTGGAGACAACAAGCCGGCAAGGGCCCCTTCTAA

Translation (432 aa):
MAAAAGRSAWLAAWGGRLRRGLAAGRRAVPTRGPLAAAVAGVALAGAGAAWHHGRVKAAAREGSRTVSAQ
KNYLGPIEKLSLRKQRFMQFSSLEHDGEYYMTPRDFLFSVMFEQVERKTLVKKLAKKDIEDVLSGIQTAR
CGSTFFRDLGDKGVISYTEYLFLLTILTKPHSGFHVAFKMLDVDGNEMIERKEFVKLQKIISKQDGFKTV
KTNETEYQDPTVKEPGVNTTLQVRFFGKRGEKKLHYKEFRRFMENLQTEVQEMEFLQFSKGLNFMRKEDF
AEWLLFFTNTENKDIYWRNVREKLSVGESISLDEFKSFCHFTTHLEDFAIAMQMFSLAHRPVRLAEFKRA
VKVATGQELSDNLLDTVFKIFDLDGDECLSHGEFLGVLKNRMHRGLWVSQQQSVQEYWKCVKKESIKGVK
EAWRQQAGKGPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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