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Report for CCDS27115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27115.1 Public Mus musculus 14 Dcaf11 23 108 98 CCDS HistoryNCBI Gene:28199Re-query CCDS DB by CCDS ID:27115.1Re-query CCDS DB by GeneID:28199See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072530.10 ENSMUSP00000072344.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072530.10Link to Ensembl Protein Viewer:ENSMUSP00000072344.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072530Re-query CCDS DB by Protein ID:ENSMUSP00000072344
Original member Current member EBI ENSMUST00000117236.7 ENSMUSP00000113014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117236.7Link to Ensembl Protein Viewer:ENSMUSP00000113014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117236Re-query CCDS DB by Protein ID:ENSMUSP00000113014
Original member Current member EBI ENSMUST00000121622.7 ENSMUSP00000113202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121622.7Link to Ensembl Protein Viewer:ENSMUSP00000113202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121622Re-query CCDS DB by Protein ID:ENSMUSP00000113202
Original member Current member EBI ENSMUST00000128490.8 ENSMUSP00000114211.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128490.8Link to Ensembl Protein Viewer:ENSMUSP00000114211.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000128490Re-query CCDS DB by Protein ID:ENSMUSP00000114211
Original member Current member NCBI NM_001199009.1 NP_001185938.1 Accepted alive Link to Nucleotide Sequence:NM_001199009.1Link to Protein Sequence:NP_001185938.1Re-query CCDS DB by Nucleotide ID:NM_001199009Re-query CCDS DB by Protein ID:NP_001185938Link to BLAST:NP_001185938.1
Original member Current member NCBI NM_133734.3 NP_598495.1 Accepted alive Link to Nucleotide Sequence:NM_133734.3Link to Protein Sequence:NP_598495.1Re-query CCDS DB by Nucleotide ID:NM_133734Re-query CCDS DB by Protein ID:NP_598495Link to BLAST:NP_598495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185938.1 549 Q91VU6-1 549 100% 0 0
NP_598495.1 549 Q91VU6-1 549 100% 0 0

Chromosomal Locations for CCDS 27115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55561288 55561442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55562892 55563019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55563372 55563499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55563720 55563784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55564053 55564153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55564371 55564517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55564734 55564788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55565098 55565166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55565484 55565541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55565637 55565822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55566864 55567017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55567248 55567400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55569023 55569129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55569228 55569371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGGATCACGGAACAGCAGCAGCGCCGGATCCGGGTCCTTAGAACCCTCTGAGGGCTTGTCCCGAAGAG
GGACTGGCCTGCGTCGTAGTGAGGAAGAGGAAGAAGAGGATGAAGATGTGGATCTGGCCCAGGTACTGGC
CTATCTCCTCCGCAGAGGCCAAGTGAGACTGGTGCAAGGAAGAGGTGCAGCAAATTTACAGCTCATCCAG
GCCCTCTCGGACTCAGAGGAAGAGCATGACAGTGCCTGGGATGGTCGCCTTGGAGATCGATATAACCCAC
CCGTGGATGCGACCCCCGACACCCGGGAGCTGGAATACAATGAGATCAAGACACAGGTGGGATTGGCCAC
GGGGCGGCTGGGACTTCGGAGGACTGCGCTGCAGCAGAGTTTTCCGCAGATGTTACACCAGAGAGAACGG
GGCCTCTGCCACCGGGGAAGCTTCTCCCTTGGAGAACAGTCTCGAGTGATGTCTCACTTCTTGCCCAATG
ATCTAAGCTTCACTGATACCTACTCTCAGAAGGCTTTCTGCGGCATCTACAGCAAAGATGGTCAAATCTT
CATGTCTGCTTGCCAAGATCAGACGATCCGACTGTACGACTGTCGCTATGGCCGATTCCACAAATTCAAA
AGCATCAAGGCTCGGGATGTAGGCTGGAGTGTCCTGGACGTGGCCTTCACCCCTGATGGAAACCACTTCC
TGTACTCCAGCTGGTCTGACTACATTCATATCTGCAACATCTATGGGGAAGGAGACACACATACTGCCCT
GGATTTAAGGCCAGATGAGCGTCGCTTTGCTGTCTTCTCCATCGCAGTCTCCTCAGATGGACGAGAAGTA
CTAGGAGGAGCCAATGATGGCTGCCTATATGTCTTTGACCGAGAACAAAACCGGCGTACTCTTCAGATCG
AGTCTCATGAGGACGATGTGAATGCAGTGGCCTTTGCTGACATAAGCTCCCAAATCCTGTTCTCTGGGGG
AGACGATGCCATCTGCAAAGTGTGGGATCGACGAACCATGAGGGAGGATGATCCCAAGCCTGTGGGTGCA
CTGGCCGGGCACCAGGATGGCATCACCTTTATTGACAGTAAGGGTGATGCCCGGTACCTCATCTCCAACT
CCAAAGATCAGACCATTAAGCTTTGGGATATCAGGCGCTTTTCCAGCCGAGAAGGCATGGAAGCATCACG
ACTGGCTGCCACACAGCAAAACTGGGACTATCGCTGGCAGCAGGTGCCCAAGATCGCCTGGAAGAAGTTG
AAGCTCCCAGGTGACAGCTCCTTGATGACCTACAGAGGCCATGGAGTGCTTCACACTCTGATCCGATGCC
GATTCTCCCCAGCCCACAGCACCGGCCAGCAGTTCATCTACAGTGGCTGCTCTACTGGCAAAGTGGTTGT
ATATGACCTCTTGAGCGGCCACATTGTTAAGAAGCTGACCAATCACAAGGCCTGTGTGCGTGATGTCAGT
TGGCATCCCTTTGAAGAAAAGATTGTCAGCAGTTCGTGGGATGGGAACCTACGTCTGTGGCAGTACCGCC
AAGCTGAGTACTTCCAGGATGACATGCCAGAGTCTGACATGAACAGAGTCTGTTCCAGTGGCCCTACTCC
AGTGCCCTGCCCATCTGTGGCCTTTTCCTCACCTCAGTAG

Translation (549 aa):
MGSRNSSSAGSGSLEPSEGLSRRGTGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQGRGAANLQLIQ
ALSDSEEEHDSAWDGRLGDRYNPPVDATPDTRELEYNEIKTQVGLATGRLGLRRTALQQSFPQMLHQRER
GLCHRGSFSLGEQSRVMSHFLPNDLSFTDTYSQKAFCGIYSKDGQIFMSACQDQTIRLYDCRYGRFHKFK
SIKARDVGWSVLDVAFTPDGNHFLYSSWSDYIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREV
LGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGA
LAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKL
KLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVS
WHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESDMNRVCSSGPTPVPCPSVAFSSPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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