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Report for CCDS27102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27102.1 Public Mus musculus 14 Homez 23 108 98 CCDS HistoryNCBI Gene:239099Re-query CCDS DB by CCDS ID:27102.1Re-query CCDS DB by GeneID:239099See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081162.5 ENSMUSP00000079929.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081162.5Link to Ensembl Protein Viewer:ENSMUSP00000079929.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081162Re-query CCDS DB by Protein ID:ENSMUSP00000079929
Original member Current member EBI ENSMUST00000142283.3 ENSMUSP00000117828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142283.3Link to Ensembl Protein Viewer:ENSMUSP00000117828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142283Re-query CCDS DB by Protein ID:ENSMUSP00000117828
Original member NCBI NM_001177705.1 NP_001171176.1 Updated not alive Link to Nucleotide Sequence:NM_001177705.1Link to Protein Sequence:NP_001171176.1Re-query CCDS DB by Nucleotide ID:NM_001177705Re-query CCDS DB by Protein ID:NP_001171176
Current member NCBI NM_001177705.2 NP_001171176.1 Accepted alive Link to Nucleotide Sequence:NM_001177705.2Link to Protein Sequence:NP_001171176.1Re-query CCDS DB by Nucleotide ID:NM_001177705Re-query CCDS DB by Protein ID:NP_001171176Link to BLAST:NP_001171176.1
Original member Current member NCBI NM_183174.3 NP_898997.2 Accepted alive Link to Nucleotide Sequence:NM_183174.3Link to Protein Sequence:NP_898997.2Re-query CCDS DB by Nucleotide ID:NM_183174Re-query CCDS DB by Protein ID:NP_898997Link to BLAST:NP_898997.2

Chromosomal Locations for CCDS 27102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54856693 54858249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGAGTCCTAATAAAGATGCCAGCAGTCTCAACAGCTCTGCAGCAGGGCTTGTCTGTCTCCCGCCAGTCT
CAGAGGAGCTACAGCTTGTGTGGACTCAAGCCATCCAAACCAGTGAGCTGGATGGAAATGAGCACCTGCT
ACAAGCCTTCAGCTACTTCCCCTATCCAAGCCTGGCAGATATCGCTCTCCTCTGCCTGCGGCATGGGCTG
CAGATGGAGAAGGTAAAGACCTGGTTCATGGCCCAACGTCTCCGCTGCGGCATTAGCTGGTCATCTGAAG
AGATAGAGGAGACTCGTGCCAGAGTGGTGTACCACCGAGATCAGCTCCTTTTCAAGTCTCTTCTCTCTTT
CACACAGCAGTCAGTGAGGCCCCCACAGGAGAGGCCTCCAGTGCTCCGTCCGGAGCAGGTTGCTCTTGGA
CTGAGTCCTCTGGCGCCTAGTGAGCAGCCCACTCATATGAAAGGATTGAAGGTTGAGCCTGAGGAGCCCT
CTCAGGTATCACAGCTGCCACTGAATCATCAGAACGCTAAGGAGCCTCTGATGATGGGCAGCAGAACATT
CTCCCACCAATCAGACTGTCAGGATCTTCAGATCAGTGGCCTCTCTAAGGAGCAGGCAGGCAGAGGTCCT
GACCAGTCATGTGGAAAGACTGCTTCCTGGAATCACTTCACAGCTGTCCATCAGCCAGATAAGCCCGCAT
CGGTCTCATTACTTGATAATAGTTGTAAGGAGGAATCCGAACCTAGTGGAATACCTCCATCTTCCTCTAC
CTCTTCTCCCTCTTTCCAGGCATTGGCTAATGGAACCACTGCCACCCCTAAGCCCCTCCAGCCTTTGGGT
TGTATCTCACAGTCACTCTCACCTAGTAAGAAGGCACTGTCTCCACAAGTAGAACCACTCTGGCCCCAAA
GGCTATGGAATAACTCAGAACCAAATTCAGCTGGCCCCACAGAATACCTTTCCCCAGATATGCAACACCA
GCGAAAGACTAAGCGGAAAACCAAAGAACAGTTGGCCATCCTCAAATCCTTTTTCCTACAGTGCCAATGG
GCACGACGAGAAGATTACCATAAATTAGAACAGATCACTGGTTTACCTCGCCCGGAGATCATTCAATGGT
TTGGTGACACACGATATGCCTTGAAGCATGGACAGCTGAAATGGTTTCGGGACAATGCAGTACTTGGTAC
CCCTAGTTTTCAAGATCCAGCCATTCCTACACCTTCAACTCGTTCCTTGAAAGAATGGGCCAAGACACCA
CCTCTACCAGCCCCACCGCCCCCACCAGATATACGACCTTTGGAGAAGTACTGGGCAGCCCACCAGCAGC
TGCAGGAAGCTGATATCCTTAAACTGAGTCAGGCATCACGACTAAGCACTCAGCAAGTGTTGGACTGGTT
TGACTCTCGATTGCCTAAGCCAGCAGAAGTGGTAGTTTGTCTAGATGAAGAAGACGAGGAGGATGAGGAG
GATGAACTGCCAGAAGATGGTGAGGAAGAGGAGGAGGAGGAGGAAGATGATGATGATGGTGATGATGATG
TCATCATATGGGACTGA

Translation (518 aa):
MSPNKDASSLNSSAAGLVCLPPVSEELQLVWTQAIQTSELDGNEHLLQAFSYFPYPSLADIALLCLRHGL
QMEKVKTWFMAQRLRCGISWSSEEIEETRARVVYHRDQLLFKSLLSFTQQSVRPPQERPPVLRPEQVALG
LSPLAPSEQPTHMKGLKVEPEEPSQVSQLPLNHQNAKEPLMMGSRTFSHQSDCQDLQISGLSKEQAGRGP
DQSCGKTASWNHFTAVHQPDKPASVSLLDNSCKEESEPSGIPPSSSTSSPSFQALANGTTATPKPLQPLG
CISQSLSPSKKALSPQVEPLWPQRLWNNSEPNSAGPTEYLSPDMQHQRKTKRKTKEQLAILKSFFLQCQW
ARREDYHKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDNAVLGTPSFQDPAIPTPSTRSLKEWAKTP
PLPAPPPPPDIRPLEKYWAAHQQLQEADILKLSQASRLSTQQVLDWFDSRLPKPAEVVVCLDEEDEEDEE
DELPEDGEEEEEEEEDDDDGDDDVIIWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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