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Report for CCDS2705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2705.1 Public Homo sapiens 3 CCDC13 24 110 108 CCDS HistoryNCBI Gene:152206Re-query CCDS DB by CCDS ID:2705.1Re-query CCDS DB by GeneID:152206See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2705.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310232.11 ENSP00000309836.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310232.11Link to Ensembl Protein Viewer:ENSP00000309836.6Re-query CCDS DB by Nucleotide ID:ENST00000310232Re-query CCDS DB by Protein ID:ENSP00000309836
Original member Current member NCBI NM_144719.4 NP_653320.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144719.4Link to Protein Sequence:NP_653320.3Re-query CCDS DB by Nucleotide ID:NM_144719Re-query CCDS DB by Protein ID:NP_653320Link to BLAST:NP_653320.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653320.3 715 Q8IYE1 715 100% 0 0

Chromosomal Locations for CCDS 2705.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42708980 42709139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42709684 42709798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42713162 42713316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42730467 42730589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42732887 42732970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42733470 42733609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42735707 42735913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42739634 42739810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42742896 42743057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42745923 42746027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42747257 42747373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42751936 42752025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42752575 42752717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42757066 42757214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42758125 42758345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGGCAGCAGATGAAAGCTCACAGAACACTTTGCGGCTCCAGTTCAAGGCAATGCAGGAGATGCAGCACA
AACGGTTACAGAAGCAGATGGAGAAAAAGAGGGAAAAAGAACTGAGCCTCAAAAGCAGAGCTGACGACCA
AGAGGAGCCCTTGGAGGTTTCAGATGGCCTCAGCCTTCTCCACGCAGGGGAGCCAAACTCGAAAAATAGC
TTTGAGAAGAGGGTGCTTGAAGATGAGATTGAACACCTTCGAAATGAGCTCAGGGAAACGGTGGACGAGA
ACGGGCGATTGTATAAGCTGCTGAAGGAAAGGGACTTTGAAATCAAACACCTCAAAAAGAAAATAGAAGA
GGACAGATTTGCCTTCACAGGGACAGCCGGTGTAGCCGGAGACGTGGTCGCCACCAAAATTGTGGAGCTA
TCAAAAAAGAACCGGCTGTTGATGGCAGAATCAGAGGGTGCAAAAACCAGGGTGAAGCAGCTGACCAATC
GCATCCAGGAGCTGGAGCGGGAACTGCAGACAGCCCTGACCAGGCTGTCAGCCAAGGGGGCCACCGACGC
AGGAGCCAAGCCACCGAGGGCCCAGATGGGAGACAGAGCATTGCTGGAGACCCCAGAGGTGAAGGCCCTG
CAGGACAGGCTGGTGGCCACCAACTTGAAGATGAGTGACCTCCGAAACCAGATCCAGTCTGTGAAGCAGG
AGCTGCGGATGGCACAGAAGGTTTTGGCCAGAGAGGTTGGGGAAGACATCAACGTTCAGCAGCTCCTATC
TTCGCCAGGGACCTGGAGGGGTCGGGCTCAACAAATTCTTGTTTTGCAGAGCAAGGTTCAAGAGCTTGAG
AAGCAATTGGGCCAGGCCCGGAGCCAGTCTGCGGGAACAGCCAGTGATGAGTTGTCTGTCTATCCAGACC
CAAGGAAGCTGTCGGCACAGGAGAAAAACCTGCTGAGGATCCGCAGCCTGGAAAGGGAAAAACAGGAAGG
CTTGGAGAAACTTGCCAGTGAACGGGATGTCCTCCAGAGAGAGCTTGAAGAGCTAAAAAAGAAGTTCGAG
GGCATGAGGTCTCGGAACAAGCTGCTGTCAAGTGAGATGAAGACCCTCAAGAGTCAGATGGGAACCCTGG
TGGAGAAGGGCCGGCATGATGACGAGCTCATCGACGCCCTCATGGACCAGCTGAAGCAGCTACAGGAGAT
CCTAGGCAGCCTGAGTCTGCAGGAGGAGAAAACGCGAGTGTCCCAGCACCACCTGGACCAGCAACTGAAC
AGCGAGGCTCAGCGGAGCAACAGCCTAGTCGCCCAGCTGCAGGCCATGGTAGCTGAGCGGGAGGCCAAAG
TGCGACAGCTGGAGATGGAGATCGGACAACTCAATGTGCACTATCTTCGGAATAAAGGAGTGGGTGAGGG
GTCCAGTGGCCGCGAGGTCAGCCCTGCCTATACCCAGTTCCTGGAGGACCCAGGCCTGACCAAGTCCCCG
GCCTCAGCAGGCGATCATGTTGGCAGGCTTGGATCTTCTCGCTCTGTGACCAGCCTGGGCCACACACTGG
TGGAATCTGCTCTCACGAGGCCTTCCCTGCCCAGTCCCCACAGGACCTCACCTAGGTTCTCGGACTCCCC
AGAACAAAAAGGCTGGCAGGCACAAGTGTCAGAGATCAAGGCCCTCTGGCAGGCTGCCGAGGTGGAGCGT
GACCGGCTCACCGAGTTTGTCACTGTCCTGCAGAAACGGGTGGAGGAGAGCAACAGCAAGCTCCTGGAGT
CAGAGAGGAAGCTGCAGGAGGAGCGACACCGCACCGTGGTGCTGGAGCAACATCTGGAGAAGATACGCCT
GGAGCCAGGGAAGGCATCAGCCTCCCAGAGAGCAGCTCCCAGGACCAAAACAGGTCTGCCCACCTCTAAC
AACAGGCACAACCCAACCGGGAGCGAGAAGAAGGACCCATCCTTTGCCCAGCTCTCCGATGTGCCCGTGG
AATCCCAAATGGAAGAGCTGACAACCAGGCTGGCCATCCAGGTGGAGGAGAATGAAATGCTAAAGGCTGC
CCTGGGCAGTGCCCTGCGGGGAAAGGAGGAGGACTTCCGGATGTACCATGAGATCCTGGGCCAGGTGAAA
AGTGTCTTCCTGCAGGCCCTGCGGCAGCAGAAGACAGGCAAGCAATAG

Translation (715 aa):
MAADESSQNTLRLQFKAMQEMQHKRLQKQMEKKREKELSLKSRADDQEEPLEVSDGLSLLHAGEPNSKNS
FEKRVLEDEIEHLRNELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRFAFTGTAGVAGDVVATKIVEL
SKKNRLLMAESEGAKTRVKQLTNRIQELERELQTALTRLSAKGATDAGAKPPRAQMGDRALLETPEVKAL
QDRLVATNLKMSDLRNQIQSVKQELRMAQKVLAREVGEDINVQQLLSSPGTWRGRAQQILVLQSKVQELE
KQLGQARSQSAGTASDELSVYPDPRKLSAQEKNLLRIRSLEREKQEGLEKLASERDVLQRELEELKKKFE
GMRSRNKLLSSEMKTLKSQMGTLVEKGRHDDELIDALMDQLKQLQEILGSLSLQEEKTRVSQHHLDQQLN
SEAQRSNSLVAQLQAMVAEREAKVRQLEMEIGQLNVHYLRNKGVGEGSSGREVSPAYTQFLEDPGLTKSP
ASAGDHVGRLGSSRSVTSLGHTLVESALTRPSLPSPHRTSPRFSDSPEQKGWQAQVSEIKALWQAAEVER
DRLTEFVTVLQKRVEESNSKLLESERKLQEERHRTVVLEQHLEKIRLEPGKASASQRAAPRTKTGLPTSN
NRHNPTGSEKKDPSFAQLSDVPVESQMEELTTRLAIQVEENEMLKAALGSALRGKEEDFRMYHEILGQVK
SVFLQALRQQKTGKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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