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Report for CCDS2704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2704.1 Public Homo sapiens 3 HHATL 24 110 108 CCDS HistoryNCBI Gene:57467Re-query CCDS DB by CCDS ID:2704.1Re-query CCDS DB by GeneID:57467See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2704.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310417.9 ENSP00000310621.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310417.9Link to Ensembl Protein Viewer:ENSP00000310621.5Re-query CCDS DB by Nucleotide ID:ENST00000310417Re-query CCDS DB by Protein ID:ENSP00000310621
Original member Current member EBI ENST00000441594.6 ENSP00000405423.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441594.6Link to Ensembl Protein Viewer:ENSP00000405423.1Re-query CCDS DB by Nucleotide ID:ENST00000441594Re-query CCDS DB by Protein ID:ENSP00000405423
Original member Current member NCBI NM_020707.4 NP_065758.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020707.4Link to Protein Sequence:NP_065758.3Re-query CCDS DB by Nucleotide ID:NM_020707Re-query CCDS DB by Protein ID:NP_065758Link to BLAST:NP_065758.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065758.3 504 Q9HCP6 504 100% 0 0

Chromosomal Locations for CCDS 2704.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42692751 42692875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42693077 42693218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42693617 42693818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42696842 42696877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42697001 42697145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42697508 42697679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42698142 42698351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42698708 42698902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42699032 42699145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42699758 42699825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42700721 42700826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGGCATCAAGACAGCATTGCCGGCGGCTGAGCTGGGCCTCTACTCTCTGGTGCTGAGTGGGGCCCTGG
CCTATGCTGGCCGGGGCCTCCTTGAGGCTTCACAAGATGGGGCCCACAGGAAGGCCTTCCGGGAGTCTGT
GCGACCTGGCTGGGAGTACATTGGCCGGAAGATGGATGTGGCTGACTTCGAGTGGGTGATGTGGTTCACC
TCCTTTCGCAACGTCATCATCTTTGCCCTCTCCGGACATGTGCTGTTTGCTAAACTCTGCACGATGGTTG
CCCCAAAGCTCCGCTCCTGGATGTATGCTGTGTACGGGGCCTTGGCTGTGATGGGCACAATGGGCCCTTG
GTACCTGCTGCTGCTGCTTGGTCACTGTGTGGGCCTCTATGTGGCCTCGCTTTTGGGCCAGCCCTGGCTC
TGTCTTGGCCTTGGCTTGGCCAGCCTGGCCTCCTTCAAGATGGACCCCCTAATCTCTTGGCAGAGCGGGT
TTGTAACAGGCACTTTTGATCTTCAAGAGGTGCTGTTTCATGGGGGCAGCAGCTTCACAGTGCTGCGTTG
CACCAGCTTTGCACTGGAGAGCTGTGCCCACCCTGACCGCCACTACTCCTTAGCTGACCTGCTCAAGTAC
AACTTCTACCTGCCCTTCTTCTTCTTCGGGCCCATCATGACCTTTGATCGCTTCCATGCTCAGGTGAGCC
AGGTGGAGCCAGTGAGACGCGAGGGTGAGCTGTGGCACATCCGAGCCCAGGCAGGCCTAAGCGTGGTGGC
CATCATGGCCGTCGACATCTTCTTTCACTTCTTCTACATCCTCACTATCCCCAGCGACCTCAAGTTCGCC
AACCGCCTCCCAGACAGTGCCCTCGCTGGCCTAGCCTATTCAAACCTGGTGTATGACTGGGTGAAGGCGG
CCGTCCTCTTTGGTGTTGTCAACACTGTGGCATGCCTCGACCACCTGGACCCACCCCAGCCTCCCAAGTG
CATCACCGCACTCTACGTCTTTGCGGAAACGCACTTTGACCGTGGCATCAACGACTGGCTTTGCAAATAT
GTGTATAACCACATTGGTGGGGAGCATTCCGCTGTGATCCCAGAGCTGGCAGCCACAGTGGCCACATTTG
CCATCACCACACTGTGGCTTGGGCCTTGTGACATTGTCTACCTGTGGTCATTCCTTAACTGCTTTGGCCT
CAACTTTGAGCTCTGGATGCAAAAACTGGCAGAGTGGGGGCCCCTAGCACGAATTGAGGCCTCTCTGTCA
GTGCAGATGTCCCGTAGGGTCCGGGCCCTGTTTGGAGCCATGAACTTCTGGGCCATCATCATGTACAACC
TTGTGAGCCTGAACAGCCTCAAATTCACAGAGCTGGTTGCCCGGCGCCTGCTACTCACAGGGTTCCCCCA
GACCACGCTGTCCATCCTGTTTGTCACCTACTGTGGCGTCCAGCTGGTAAAGGAGCGTGAGCGAACCTTG
GCACTGGAGGAGGAGCAGAAGCAGGACAAAGAGAAGCCGGAGTAG

Translation (504 aa):
MGIKTALPAAELGLYSLVLSGALAYAGRGLLEASQDGAHRKAFRESVRPGWEYIGRKMDVADFEWVMWFT
SFRNVIIFALSGHVLFAKLCTMVAPKLRSWMYAVYGALAVMGTMGPWYLLLLLGHCVGLYVASLLGQPWL
CLGLGLASLASFKMDPLISWQSGFVTGTFDLQEVLFHGGSSFTVLRCTSFALESCAHPDRHYSLADLLKY
NFYLPFFFFGPIMTFDRFHAQVSQVEPVRREGELWHIRAQAGLSVVAIMAVDIFFHFFYILTIPSDLKFA
NRLPDSALAGLAYSNLVYDWVKAAVLFGVVNTVACLDHLDPPQPPKCITALYVFAETHFDRGINDWLCKY
VYNHIGGEHSAVIPELAATVATFAITTLWLGPCDIVYLWSFLNCFGLNFELWMQKLAEWGPLARIEASLS
VQMSRRVRALFGAMNFWAIIMYNLVSLNSLKFTELVARRLLLTGFPQTTLSILFVTYCGVQLVKERERTL
ALEEEQKQDKEKPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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