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Report for CCDS2689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2689.1 Public Homo sapiens 3 MYRIP 24 110 108 CCDS HistoryNCBI Gene:25924Re-query CCDS DB by CCDS ID:2689.1Re-query CCDS DB by GeneID:25924See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302541.11 ENSP00000301972.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302541.11Link to Ensembl Protein Viewer:ENSP00000301972.6Re-query CCDS DB by Nucleotide ID:ENST00000302541Re-query CCDS DB by Protein ID:ENSP00000301972
Original member Current member EBI ENST00000444716.5 ENSP00000398665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444716.5Link to Ensembl Protein Viewer:ENSP00000398665.1Re-query CCDS DB by Nucleotide ID:ENST00000444716Re-query CCDS DB by Protein ID:ENSP00000398665
Original member Current member NCBI NM_001284423.2 NP_001271352.1 Accepted alive Link to Nucleotide Sequence:NM_001284423.2Link to Protein Sequence:NP_001271352.1Re-query CCDS DB by Nucleotide ID:NM_001284423Re-query CCDS DB by Protein ID:NP_001271352Link to BLAST:NP_001271352.1
Original member Current member NCBI NM_015460.4 NP_056275.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015460.4Link to Protein Sequence:NP_056275.2Re-query CCDS DB by Nucleotide ID:NM_015460Re-query CCDS DB by Protein ID:NP_056275Link to BLAST:NP_056275.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271352.1 859 Q8NFW9-1 859 100% 0 0
NP_056275.2 859 Q8NFW9-1 859 100% 0 0

Chromosomal Locations for CCDS 2689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39900817 39900926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40044050 40044271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40151048 40151184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40162730 40162810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40166846 40166943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40167159 40167239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40169950 40170093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40182220 40182373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40189826 40190463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40209854 40210093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40233859 40234053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40244446 40244607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40250222 40250326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40250439 40250499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40251881 40251999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40258134 40258166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGGGGAGGAAGCTGGACCTGTCTGGTTTGACTGATGATGAAACAGAGCATGTTCTTCAGGTGGTTCAAA
GAGACTTCAATCTTCGCAAAAAAGAAGAAGAACGACTAAGTGAGCTGAAGCAGAAGCTGGATGAGGAAGG
CAGCAAGTGCAGCATCCTCTCGAAGCACCAGCAGTTTGTGGAGCACTGCTGCATGCGCTGCTGCTCGCCC
TTCACCTTCCTCGTCAACACCAAGCGCCAGTGTGGAGATTGCAAATTCAATGTCTGCAAGAGCTGCTGCT
CCTACCAGAAGCACGAAAAGGCCTGGGTCTGCTGCGTCTGCCAGCAAGCGAGGCTTCTGAGGGCCCAATC
TCTGGAATGGTTCTACAATAATGTGAAGAGCCGCTTCAAGCGCTTTGGCAGTGCCAAGGTTCTGAAGAAC
CTGTACAGGAAGCACCGGCTGGAGAGTGGCGCGTGCTTCGACATTCTAGGAGGAAGCCTTTTTGAGTCAA
ACCTGGAGAATGAAGGAAGCATTTCTGGCAGTGATTCAACATTTTATAGGCAGTCAGAAGGACATAGTGT
GATGGACACCTTGGCTGTGGCCCTACGGGTGGCTGAAGAGGCCATTGAGGAAGCAATTTCCAAAGCAGAG
GCATATGGGGACAGCCTGGACAAGCAAAATGAGGCCAGTTACCTGCGGGACCACAAGGAGGAGCTAACTG
AGGAACTGGCCACGACAATCCTGCAGAAGATTATACGAAAACAGAAGAGCAAAAGTGAGCAGCAAGTGGA
AGAAGAGCCAGGATGGCCACATCCCCAGAGTTGCAGCACAAAGGTGGCAGATGAGGGGACCTCAGCATCC
CCTGGAGGCTACCGTGCTCCCGCTGCCCTCTGGAGGTCCCAGTCTGCCTTCTCAATCACTGGAGAAGAAG
CCCTGAAGACCCCTCCAGTGGAGGCTCCATCGAGGCAGCCAAGGGACCAAGGCCAACACCCGAGAGCAGA
GTCTGCTCTGCCCAGCTGGAAGAGTGTGGACAGGCTGGATGAAACAAACCTGGCCCCAGTTTTGCAGAGC
CCCGACGGGAACTGGGTGGCCCTGAAGGATGGCGCTCCACCCCCCACCCGACTACTGGCCAAACCTAAGA
GCGGGACGTTTCAGGCCCTGGAGGTGGCCTCCAGTGTGGCATCTGCCTACGATGAGATGGGCTCCGATAG
CGAGGAAGACTTTGACTGGAGTGAGGCCTTGAGCAAGCTGTGTCCCAGGTCCCGGGCCCTGCCCAGGAAC
CCCCAGCCTCAGCCCACACAGGCCCAGAGCTCTGACCAAGGCCCCATAGCTGCCTCCCCATCCTCTGCAC
TCTCCCCCAACCCTGAGGCCATGTGCTCTGACTCGGAGACCTCCTCCGCAGGCTCTTCCCGAGAAGTTGG
GCACCAGGCCAGACTGTCCTGGTTGCAGAGGAAGGCCCCCAGGAACCCTGCAGCTGAGAAGATGCGCTTG
CATGGAGAGCTGGACGTGAACTTCAACCCCCAGTTGGCCAGCAGGGAGACCTCGGACAGCAGCGAGCCGG
AGGAGGCCCCCCACACCACAGACCGGCGGGCCAGGAGGTGGAGAAGAGCCCGACTGGGCTCAGAAGAGCC
AAGCAAAGAACCATCTTCCCCCAGCGCCCAGCTCCGGGATCTAGACACACATCAGGTGTCGGATGATTTA
TCAGAGACAGACATCAGCAATGAGGCTCGGGATCCCCAGACTCTCACAGACACCACAGAGGAGAAACGGA
GAAACAGGCTGTACGAGTTAGCAATGAAAATGAGTGAAAAGGAGACTTCTTCAGGGGAGGATCAGGAGTC
TGAGCCCAAGACAGAATCTGAGAACCAGAAGGAAAGTCTGTCCTCTGAAGACAACAGCCAGAGTGTCCAG
GAAGAGCTGAAGAAGAAGTTTTCTGCTGTTTCTCTCTGCAACATCTCCACAGAAGTCCTGAAAGTCATCA
ATGCCACAGAGGAGTTGATAGCAGGATCTACAGGGCCCTGGGAGTCCCCACAAGTCCCTCCTGACAGACA
GAAGGGGATGTTTCCTCGTGGGACAGACCAAGTGAGACTGGATGAGCAGCTGACTTCCCTGGAAGAAAAT
GTATACCTGGCAGCAGGCACTGTGTATGGACTGGAGACCCAGCTGACTGAGCTAGAAGATGCCGCCCGCT
GCATCCACAGTGGCACTGATGAGACCCATCTGGCGGATCTGGAGGACCAGGTGGCCACGGCTGCAGCCCA
AGTCCACCATGCTGAACTCCAGATTTCAGATATTGAGAGCCGGATTTCAGCCCTGACCATTGCAGGATTA
AACATAGCACCATGTGTGCGCTTCACAAGAAGACGGGATCAGAAGCAAAGGACCCAGGTACAAACCATAG
ATACATCAAGGCAGCAAAGGAGGAAACTGCCTGCTCCACCGGTGAAAGCTGAAAAAATTGAGACATCTTC
AGTGACTACCATTAAAACATTTAACCACAACTTCATTCTCCAAGGCTCCTCAACAAACAGGACTAAGGAA
AGGAAAGGCACCACCAAGGATTTGATGGAGCCTGCTCTGGAGTCAGCTGTGATGTACTGA

Translation (859 aa):
MGRKLDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCCMRCCSP
FTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNNVKSRFKRFGSAKVLKN
LYRKHRLESGACFDILGGSLFESNLENEGSISGSDSTFYRQSEGHSVMDTLAVALRVAEEAIEEAISKAE
AYGDSLDKQNEASYLRDHKEELTEELATTILQKIIRKQKSKSEQQVEEEPGWPHPQSCSTKVADEGTSAS
PGGYRAPAALWRSQSAFSITGEEALKTPPVEAPSRQPRDQGQHPRAESALPSWKSVDRLDETNLAPVLQS
PDGNWVALKDGAPPPTRLLAKPKSGTFQALEVASSVASAYDEMGSDSEEDFDWSEALSKLCPRSRALPRN
PQPQPTQAQSSDQGPIAASPSSALSPNPEAMCSDSETSSAGSSREVGHQARLSWLQRKAPRNPAAEKMRL
HGELDVNFNPQLASRETSDSSEPEEAPHTTDRRARRWRRARLGSEEPSKEPSSPSAQLRDLDTHQVSDDL
SETDISNEARDPQTLTDTTEEKRRNRLYELAMKMSEKETSSGEDQESEPKTESENQKESLSSEDNSQSVQ
EELKKKFSAVSLCNISTEVLKVINATEELIAGSTGPWESPQVPPDRQKGMFPRGTDQVRLDEQLTSLEEN
VYLAAGTVYGLETQLTELEDAARCIHSGTDETHLADLEDQVATAAAQVHHAELQISDIESRISALTIAGL
NIAPCVRFTRRRDQKQRTQVQTIDTSRQQRRKLPAPPVKAEKIETSSVTTIKTFNHNFILQGSSTNRTKE
RKGTTKDLMEPALESAVMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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