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Report for CCDS26842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26842.1 Public Mus musculus 14 Ecd 23 108 98 CCDS HistoryNCBI Gene:70601Re-query CCDS DB by CCDS ID:26842.1Re-query CCDS DB by GeneID:70601See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022344.3 ENSMUSP00000022344.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022344.3Link to Ensembl Protein Viewer:ENSMUSP00000022344.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022344Re-query CCDS DB by Protein ID:ENSMUSP00000022344
Original member Current member NCBI NM_027475.3 NP_081751.1 Accepted alive Link to Nucleotide Sequence:NM_027475.3Link to Protein Sequence:NP_081751.1Re-query CCDS DB by Nucleotide ID:NM_027475Re-query CCDS DB by Protein ID:NP_081751Link to BLAST:NP_081751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081751.1 641 Q9CS74 641 100% 0 0

Chromosomal Locations for CCDS 26842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20320724 20320951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20324373 20324581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20327224 20327291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20328603 20328789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20328883 20328989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20329954 20330039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20333329 20333457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20336069 20336197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20336882 20337074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20338129 20338307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20338409 20338496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20343256 20343373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20346611 20346815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGAGGGCAGTGGAAAGCTCGCAATGGTAGAGGATGCTGTGGAGTACCATCTCTTCCTGATACCAGATA
AAGCCAGAGGCACAGAAGAGCACAGAGAGATTCTTCAGAAGTACATTGAACGGATAATGACCCAGTTCGC
ACCCATACTGGTCCCTTATATCTGGCAGAATCAGCCTTTCAATCTCAAATACAAGCCTGCAAAAGGAGGT
GTTCCTGCTCATATGTACGGCATGACAAAGTTTGGAGATAACATTGAGGATGAATGGTTTATTGTTTATG
TAATAAAGCAGATTACAAAGGAATTTCCAGAGTTAGTGGCCAGGGTTGAAGACAATGATGGTGAGTTCCT
GTTAATAGAAGCGGCCGACTTTCTCCCTAAGTGGTTGGACCCTGATAACAGTGCCAACAGGGTGTTTTTT
CATCATGGGGAGCTGTGCATTATTCCTGTGCCGAGGAAATCTGAAAGGATACCATGGTTACCCATGACAC
CACCAACAATCCAGCAAGCTTTGAGTATAATCTCGGCACACCCAGAAGCTGTTTTGGCTTCAGAATCTAT
ACAAGCTGCTGTGGACAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACAC
TGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCTGTCGGCAGCCGTCCAGG
CCTTCTACCTACGGGACCCCATTGACCTAAGAGCCTGTCGTGTCTTCAAGACATTTTTGCCTGAAACACG
AATAATGGCCTCGGTCACTTTCACGAAATGTCTGTACGCACAGCTGGTACAGCAGAAGTTTGTGCCAGAC
CGGCGGAGTGGATACGGGCTCCCACCTCCATCACATCCCCAGTACCGAGCTTATGAACTGGGCATGAAGT
TGGCTCATGGATTTGAGATTTTGTGCTCCAAATGTAGCCCACATTTTTCTGACTCCAGGAAGTCTCTTGT
GACTGCCTCACCGCTCTGGGCCAGCTTCCTTGAAAGTCTGAAAAGGAATGACTACTTTAAGGGACTGATG
GACGGCTCTGCGCAGTACCAGGAGAGACTAGAAATGGCAAAGAACTATTTCCAGCTCTCTATACACCGGC
CAGAAAGTTCACTTGCTATGAGCCCAGGCGAAGAGATCCTAACCGTGTTACAGACACAGCCATTTGACGT
CGCCGAGCTCAAGACAGAAGAAGCTGACCTTCCTCCGGAGGACGATGACCAGTGGTTAGACCTCTCACCA
GACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCAGCCCGGTCCCCAGAAGGAGG
AGCTGCAGAACTATGATGTAGCGCAGGTCTCAGACAGCATGAAGGCCTTCATCTCCAAAGTGTCTAGCCA
CAAGGGGGCAGAGCTGCCCAGAGACCCTTCGGAAGCTCCAATCACTTTTGATGCAGATTCTTTTCTGAAT
TATTTTGATAAGATTTTAGGAGCAAAGCCTCAGGAGTCAGACTCTGAGGATGACCCGGGTGAGGAGGACG
TGGAAGGTGTAGACAGTGATGATGACGTGGGCTTTGAGGCTCAGGAGTCTGAGTCTCTGAAAGGAGCCCT
TGGCAGCCTCAAGTCCTACATGGCCCGGATGGACCAGGAACTGGCACACACCAGCATGGGCAGAAGCTTC
ACCACGCGGGAGCGATTGAATAAGGACCCTCCATCCCACACTGCAAATGACAATTCAGATGAAGAAGATT
CTGGTGCAGGAGATTGCGCTGTTGAAGCAGTGGATGTAGACCTGAACCTGATTTCAAATATACTGGAATC
CTACAGCTCCCAAGCGGGCCTGGCAGGACCTGCTTCCAATCTGTTACACAGCATGGGTGTGCGACTGCCC
GACAACGCTGATCACAACCCCCAAGTCAGCCAGTGA

Translation (641 aa):
MEGSGKLAMVEDAVEYHLFLIPDKARGTEEHREILQKYIERIMTQFAPILVPYIWQNQPFNLKYKPAKGG
VPAHMYGMTKFGDNIEDEWFIVYVIKQITKEFPELVARVEDNDGEFLLIEAADFLPKWLDPDNSANRVFF
HHGELCIIPVPRKSERIPWLPMTPPTIQQALSIISAHPEAVLASESIQAAVDRRVSGYPERVEASLHRAH
CFLPAGIVAVLKQQPRLLSAAVQAFYLRDPIDLRACRVFKTFLPETRIMASVTFTKCLYAQLVQQKFVPD
RRSGYGLPPPSHPQYRAYELGMKLAHGFEILCSKCSPHFSDSRKSLVTASPLWASFLESLKRNDYFKGLM
DGSAQYQERLEMAKNYFQLSIHRPESSLAMSPGEEILTVLQTQPFDVAELKTEEADLPPEDDDQWLDLSP
DQLDQLLQDAAGRKESQPGPQKEELQNYDVAQVSDSMKAFISKVSSHKGAELPRDPSEAPITFDADSFLN
YFDKILGAKPQESDSEDDPGEEDVEGVDSDDDVGFEAQESESLKGALGSLKSYMARMDQELAHTSMGRSF
TTRERLNKDPPSHTANDNSDEEDSGAGDCAVEAVDVDLNLISNILESYSSQAGLAGPASNLLHSMGVRLP
DNADHNPQVSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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