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Report for CCDS26794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26794.1 Public Mus musculus 13 Mrps30 23 108 98 CCDS HistoryNCBI Gene:59054Re-query CCDS DB by CCDS ID:26794.1Re-query CCDS DB by GeneID:59054See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022245.9 ENSMUSP00000022245.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022245.9Link to Ensembl Protein Viewer:ENSMUSP00000022245.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022245Re-query CCDS DB by Protein ID:ENSMUSP00000022245
Original member Current member NCBI NM_021556.3 NP_067531.1 Accepted alive Link to Nucleotide Sequence:NM_021556.3Link to Protein Sequence:NP_067531.1Re-query CCDS DB by Nucleotide ID:NM_021556Re-query CCDS DB by Protein ID:NP_067531Link to BLAST:NP_067531.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067531.1 442 Q9D0G0 442 100% 0 0

Chromosomal Locations for CCDS 26794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 118380353 118380669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 118382876 118383052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 118384567 118384672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 118385234 118385379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 118386652 118387234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGCGGCGGCCAGGTATTGGAAGCTGGTGCCCCGCGGCCGGGGATTGTCCCAGAATGCCGCTGCTAAGG
CGTCCGCTACGGCCCCGGAGGTGAGAGACCTGGAGGTCGTGGCGACGCCCGTCGCGCGGTACCCGCCGAT
CGTGGCTTCCATGACCGCCGACAGCAAAGCGGCGCGGCAGCGGCGGGTGCAGCGCTGGCAGGCGACGGTG
CACGCGGCCCCCTCGGTGGACGAGAAGATACGGATTCTCACCAAGATGCAGTTCAAGAAGTACGTGGTGC
ATCCGCAGATCTCCGCCTTGAACGCCGACCGCTGGTACCAGAGCTTCACCAAGACCGTGTTTGTCTCGGG
CCTGCCGCCCGCCCCGGCGCTGTCGCCGCCGCCGCCCTCGCTCGACCTCGCCGCCCTGCGCGCCGCCGTG
TGCGACTGCATCTTGCAGGAGCAGGTCTACGTGCGGCGCCGCCGGCCCCGCTCCCTCTTCGATCGTCGCC
AGGCCCTCGCCTCCTCCATCCTGGACCAGGTAGTGAGGACGCTCGTGAACCTGCTCGCTCCACTCAACCC
TGTCCTGAGCACTGCCGCTCTCGATTGTAAACGCTCTGTTGACTTTTACTGGTTGCGTGGTGAAGAACGC
ATTCCTGCTGGTCATCGAAAAGGCCATATTGATGCTTTACGATACCAAATAAATGACAAACCACACAACC
AGATTCGAATATCTAAGCAACTCCCAGAGTTTGTGCCATTGGATTACTCCATCCCTACAGAAATCCCTGT
GATGAAATGTAAACCAGACAAGCTTCCATTGTTCAGACGGCAGTATGAAAACAGTATATTTACTGGCTCA
AAAACAGCAGATCCATGCTGTTATGGCCACACCCAGTTCCATCTGATACCTGACAGACTGAAGAGAGAGA
GACTGATAAGACAGAACCAAGCTGAGCAGGTAGAAGCTGTCTTCAGAGCTAATGCCATTGCAAGTCTTTT
TGCTTGGACTGGAGCACAAGCTATGTACCAAGGGTTCTGGAGCGAAGCAGATGTTACTCGACCTTTTGTC
TCCCAGGCTGTGATCACAGACGGAAAATACTTTTCTTTTTTCTGCTACCAGTTAAATACTTTGGCACTGA
CTGTCCAAGCTGATCAAAATAACCCCCGTAAAAATCTATGTTGGGGGTCACAGAGTCAGCCTCTTTATGA
GACCGTGGAGGATAATGATGTGAAAGGCTTTGATGATGGTACTCTCCTGCAGATAGTTCACTTTCTGCTA
AATAAACCAAGAGAAGACGGAGCACAGCTGTTGGCAAGCCAGGAGAAGGAACTTGATCTGGGACCTTGA

Translation (442 aa):
MAAARYWKLVPRGRGLSQNAAAKASATAPEVRDLEVVATPVARYPPIVASMTADSKAARQRRVQRWQATV
HAAPSVDEKIRILTKMQFKKYVVHPQISALNADRWYQSFTKTVFVSGLPPAPALSPPPPSLDLAALRAAV
CDCILQEQVYVRRRRPRSLFDRRQALASSILDQVVRTLVNLLAPLNPVLSTAALDCKRSVDFYWLRGEER
IPAGHRKGHIDALRYQINDKPHNQIRISKQLPEFVPLDYSIPTEIPVMKCKPDKLPLFRRQYENSIFTGS
KTADPCCYGHTQFHLIPDRLKRERLIRQNQAEQVEAVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFV
SQAVITDGKYFSFFCYQLNTLALTVQADQNNPRKNLCWGSQSQPLYETVEDNDVKGFDDGTLLQIVHFLL
NKPREDGAQLLASQEKELDLGP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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