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Report for CCDS26788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26788.1 Public Mus musculus 13 Pelo 23 108 98 CCDS HistoryNCBI Gene:105083Re-query CCDS DB by CCDS ID:26788.1Re-query CCDS DB by GeneID:105083See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109226.4 ENSMUSP00000104849.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109226.4Link to Ensembl Protein Viewer:ENSMUSP00000104849.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109226Re-query CCDS DB by Protein ID:ENSMUSP00000104849
Original member Current member NCBI NM_134058.3 NP_598819.2 Accepted alive Link to Nucleotide Sequence:NM_134058.3Link to Protein Sequence:NP_598819.2Re-query CCDS DB by Nucleotide ID:NM_134058Re-query CCDS DB by Protein ID:NP_598819Link to BLAST:NP_598819.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598819.2 385 Q80X73 385 100% 0 0

Chromosomal Locations for CCDS 26788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 115088530 115088961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 115089194 115089919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGAAGCTCGTGAGGAAGGATATCGAGAAGGACAATGCGGGCCAGGTCACCCTCGTCCCCGAGGAGCCCG
AGGACATGTGGCACACCTTCAATTTAGTGCAGGTGGGCGACAGCCTGCGCGCCTCCACCATCCGCAAGGT
CCAGACCGAGTCCTCCACAGGCAGCGTGGGGAGCAACCGTGTCCGCACCACCCTCACCCTTTGCGTGGAG
GCCATCGACTTCGACTCCCAGGCCTGCCAGCTGCGGGTGAAGGGGACCAATATCCAAGAGAATGAGTATG
TCAAGATGGGGGCTTACCACACCATCGAACTGGAGCCCAACCGCCAGTTCACCCTGGCCAAGAAACAGTG
GGACAGTGTGGTTCTGGAACGCATCGAGCAGGCTTGCGACCCGGCGTGGAGCGCTGATGTGGCAGCTGTG
GTCATGCAGGAGGGCCTGGCCCACGTCTGCTTAGTCACGCCCAGCATGACCCTTACCCGGGCCAAGGTGG
AGGTGAACATCCCCAGGAAACGGAAAGGCAACTGCTCCCAGCATGACCGGGCCCTGGAGCGGTTCTATGA
ACAGGTGGTCCAGGCCATCCAGCGCCACATAAACTTCGAGGTTGTAAAGTGCGTTCTGGTGGCCAGCCCT
GGATTCGTGCGAGAGCAGTTCTGCGATTACATGTTTCAGCAAGCTGTGAAGACGGACAATAAAGTGCTCC
TGGAAAACCGCTCCAAATTCCTTCAGGTGCACGCCTCCTCTGGACACAAGTACTCCCTGAAAGAGGCCCT
CTGCGACCCTACTGTAGCGAGCCGCCTTTCAGACACAAAGGCAGCGGGCGAAGTAAAAGCCTTGGATGAC
TTCTACAAAATGTTACAGCACGAGCCCGACCGAGCGTTCTATGGACTCAAGCAGGTGGAGAGGGCCAACG
AAGCCTTGGCCATAGACACTTTGCTCATCAGTGACGAGCTCTTCCGGCATCAGGATGTGGCCACCCGGAG
CCGGTATGTCAGGCTAGTGGACAGTGTGAAGGAGAATGCGGGCACCGTAAGGATATTCTCTAGTCTCCAT
GTGTCGGGGGAACAGCTGGGCCAGCTGACGGGAGTAGCCGCCATTCTCCGCTTCCCAGTGCCAGAACTTT
CTGACCAAGAGGATGATTCAAGTTCTGAAGAGGATTAA

Translation (385 aa):
MKLVRKDIEKDNAGQVTLVPEEPEDMWHTFNLVQVGDSLRASTIRKVQTESSTGSVGSNRVRTTLTLCVE
AIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAV
VMQEGLAHVCLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHINFEVVKCVLVASP
GFVREQFCDYMFQQAVKTDNKVLLENRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDD
FYKMLQHEPDRAFYGLKQVERANEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLH
VSGEQLGQLTGVAAILRFPVPELSDQEDDSSSEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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