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Report for CCDS26696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26696.1 Public Mus musculus 13 Zbed3 23 108 98 CCDS HistoryNCBI Gene:72114Re-query CCDS DB by CCDS ID:26696.1Re-query CCDS DB by GeneID:72114See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045909.7 ENSMUSP00000044774.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045909.7Link to Ensembl Protein Viewer:ENSMUSP00000044774.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045909Re-query CCDS DB by Protein ID:ENSMUSP00000044774
Original member Current member EBI ENSMUST00000221807.1 ENSMUSP00000152153.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221807.1Link to Ensembl Protein Viewer:ENSMUSP00000152153.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221807Re-query CCDS DB by Protein ID:ENSMUSP00000152153
Original member Current member NCBI NM_001302538.1 NP_001289467.1 Accepted alive Link to Nucleotide Sequence:NM_001302538.1Link to Protein Sequence:NP_001289467.1Re-query CCDS DB by Nucleotide ID:NM_001302538Re-query CCDS DB by Protein ID:NP_001289467Link to BLAST:NP_001289467.1
Original member Current member NCBI NM_001302539.1 NP_001289468.1 Accepted alive Link to Nucleotide Sequence:NM_001302539.1Link to Protein Sequence:NP_001289468.1Re-query CCDS DB by Nucleotide ID:NM_001302539Re-query CCDS DB by Protein ID:NP_001289468Link to BLAST:NP_001289468.1
Original member Current member NCBI NM_028106.3 NP_082382.1 Accepted alive Link to Nucleotide Sequence:NM_028106.3Link to Protein Sequence:NP_082382.1Re-query CCDS DB by Nucleotide ID:NM_028106Re-query CCDS DB by Protein ID:NP_082382Link to BLAST:NP_082382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289467.1 228 Q9D0L1 228 100% 0 0
NP_001289468.1 228 Q9D0L1 228 100% 0 0
NP_082382.1 228 Q9D0L1 228 100% 0 0

Chromosomal Locations for CCDS 26696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95336070 95336756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGAAGAGTAAAAAGCCCCTGAAGATCACCATGGAAGACAGCCGGAGGCTTAATGACCCAGCGGAACAAG
GCGGCCTCTGTCCCGCGCCCGTGGGGCCATCATACTCCGAGGCCTGGGGCTACTTCCATCTGGACCCAGC
TCAGCCTAGGCACCGGATGATGAGCGCCTGGGCCACCTGCCGCCTGTGCGGGCTGCAAGTGGGTGGCCTC
CCCAACTTCCAGATGTGGACGCGGGCGCTGTGCCAGCACCTGAGTGATGTGCACCTGCCGGAGCTGAAGA
AGAGCGCTGCTCCGAGCTCGCCGACCACCATGCCCTGCCCGCCGCCGCCCAGCCCCACCATGGCTGCCGA
GGGCGACTGGGCACGCCTGTTGGAGCAGATGGGTGAGCTGGCCATGCGGGGCAGCCAGCGGGAGCTGGAG
CTGGAGCGGCGCGAGGCGGCCCTAATGCAGGCGGAACTCGAGCTGGAGCGCAAGCGCCAGGCTCTGAAGC
AGGAGGCACAATCCGTGGAGCAGGAGCGCCACCAGCTACAGGTAGAGCGTGAAGCACTGAGTAAGTGGAT
AAAGAAGCAGAGCCCCGGTGCACAGGTCCCGGAACCGCCCTCTCCCCTGCCTCTGCTCCCCAAGGAGGAC
CCTGACATCCATGACAACAACAGTGACAATGATATGGTCACCAAGGTCCTGCTGTAG

Translation (228 aa):
MKSKKPLKITMEDSRRLNDPAEQGGLCPAPVGPSYSEAWGYFHLDPAQPRHRMMSAWATCRLCGLQVGGL
PNFQMWTRALCQHLSDVHLPELKKSAAPSSPTTMPCPPPPSPTMAAEGDWARLLEQMGELAMRGSQRELE
LERREAALMQAELELERKRQALKQEAQSVEQERHQLQVEREALSKWIKKQSPGAQVPEPPSPLPLLPKED
PDIHDNNSDNDMVTKVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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