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Report for CCDS26572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26572.1 Public Mus musculus 13 Slc28a3 23 108 98 CCDS HistoryNCBI Gene:114304Re-query CCDS DB by CCDS ID:26572.1Re-query CCDS DB by GeneID:114304See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022036.13 ENSMUSP00000022036.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022036.13Link to Ensembl Protein Viewer:ENSMUSP00000022036.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022036Re-query CCDS DB by Protein ID:ENSMUSP00000022036
Original member Current member NCBI NM_022317.3 NP_071712.3 Accepted alive Link to Nucleotide Sequence:NM_022317.3Link to Protein Sequence:NP_071712.3Re-query CCDS DB by Nucleotide ID:NM_022317Re-query CCDS DB by Protein ID:NP_071712Link to BLAST:NP_071712.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071712.3 703 Q9ERH8 703 100% 0 0

Chromosomal Locations for CCDS 26572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58555690 58555816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58558209 58558320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58558553 58558651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58559209 58559290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58563015 58563212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58564017 58564185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58566225 58566355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58569277 58569402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58571445 58571525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58572557 58572637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58573444 58573521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58574241 58574354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58576725 58576869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58578405 58578594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58580515 58580606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58582614 58582699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58588182 58588271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58610697 58610807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGTCCAGGGCAGACCCGGGAAAGAATTCCGAGCCCAGTGAGAGCAAGATGAGCCTGGAGCTGAGGCCAA
CAGCCCCCAGCGACCTGGGCCGCAGCAATGAAGCCTTTCAGGATGAAGACCTTGAACGGCAGAACACTCC
AGGAAACAGCACAGTCAGGAACAGAGTTGTACAAAGCGGGGAACAAGGACACGCCAAACAGGACGACAGG
CAGATCACGATTGAACAGGAGCCTCTAGGAAACAAAGAAGACCCAGAGGATGATAGCGAAGATGAGCATC
AGAAAGGGTTCTTGGAGAGGAAGTATGATACAATTTGTGAGTTTTGTAGAAAGCACAGAGTTGTTCTCCG
AAGCACCATCTGGGCCGTTTTACTGACAGGTTTCCTGGCCCTGGTGATTGCAGCCTGTGCGATAAACTTC
CACAGAGCCCTTCCTCTTTTTGTGATCACCTTGGTGACCATCTTCTTTGTCATCTGGGATCACTTGATGG
CCAAATATGAACAGCGAATAGATGATTTCCTGTCTCCTGGCAGAAGGCTTCTCGACAGGCATTGGTTCTG
GCTGAAATGGGTGGTCTGGAGTTCATTGATCCTGGCGATTATTCTCTGGCTGTCTCTTGACACTGCCAAA
CTGGGCCAACAAAACTTGGTATCCTTTGGCGGACTCATCATGTACCTTATCCTGTTATTTCTGTTTTCCA
AACATCCCACCAGAGTTTACTGGAGGCCTGTCTTTTGGGGAATTGGACTACAGTTTCTTCTTGGGCTCTT
AATTCTAAGAACTAGGCCTGGATTTGTTGCTTTTGATTGGATGGGGAGACAAGTTCAGACTTTCCTGGGG
TACACTGATACTGGAGCCAGGTTTGTCTTTGGGGAAAAGTATACAGACCACTTCTTTGCATTTAAGATCC
TGCCCATCGTGGTTTTCTTCAGCACCGTGATGTCTATGCTTTACTATCTGGGGCTGATGCAGTGGATCAT
CAGAAAGGTCGGGTGGCTAATGCTTGTCACGATGGGGTCATCTCCCATTGAGTCTGTAGTTGCTGCTGGC
AACATATTTATTGGGCAAACAGAGTCTCCACTACTGGTCCAACCATATTTACCACACGTCACCAAGTCGG
AACTCCATACCATCATGACAGCTGGCTTTGCCACGATTGCTGGAAGTGTATTGGGCGCATATATCTCTTT
TGGGGTGTCGTCCACGCATTTGCTAACTGCCTCGGTCATGTCCGCACCTGCAGCCCTGGCTGTGGCCAAA
CTCTTTTGGCCTGAGACAGAGAAACCCAAAATAACCCTCAAGAGTGCCATGAAGATGGAAAATGGTGATT
CAAGGAATCTCCTGGAGGCAGCCTCTCAGGGCGCATCCTCGTCCATCCCTCTGGTGGCAAACATTGCTGC
GAATCTGATCGCCTTCCTGGCCTTGCTCTCCTTTGTGAACTCTGCCCTGTCTTGGTTTGGAAGCATGTTC
AACTACCCAGAGCTGAGTTTTGAGCTCATTTGTTCCTACATCTTCATGCCCTTCTCTTTCATGATGGGAG
TCGACTGGCAAGACAGCTTTATGGTCGCCAAACTCATAGGTTACAAGACATTCTTCAATGAATTTGTGGC
TTATGACCACCTCTCAAAATTAATCAATTTGAGGAAAGCGGCTGGACCTAAATTTGTGAATGGCGTGCAG
CAATATATGTCAATTCGCTCTGAGACCATCGCAACCTATGCCCTCTGTGGTTTTGCCAATTTTGGTTCCC
TAGGAATCGTGATCGGTGGACTTACATCCATAGCACCATCCAGAAAACGAGACATCGCCTCTGGAGCCAT
GAGAGCCCTGATTGCTGGCACCATTGCCTGCTTCATGACAGCCTGCATCGCAGGCATCCTCTCTGATACC
CCGGTGGATATCAACTGCCATCACGTTCTAGAGAACGGCAGAGTACTCAGCAACACAACCGAAGTGGTGT
CTTGTTGCCAAAATCTGTTCAACAGCACTGTTGCCAAGGGACCAAATGACGTCGTCCCAGGAGGAAACTT
CAGCCTCTATGCTTTGAAGAGCTGCTGCAACCTGCTGAAACCACCAACGCTGAACTGCAATTGGATCCCT
AATAAATTGTGA

Translation (703 aa):
MSRADPGKNSEPSESKMSLELRPTAPSDLGRSNEAFQDEDLERQNTPGNSTVRNRVVQSGEQGHAKQDDR
QITIEQEPLGNKEDPEDDSEDEHQKGFLERKYDTICEFCRKHRVVLRSTIWAVLLTGFLALVIAACAINF
HRALPLFVITLVTIFFVIWDHLMAKYEQRIDDFLSPGRRLLDRHWFWLKWVVWSSLILAIILWLSLDTAK
LGQQNLVSFGGLIMYLILLFLFSKHPTRVYWRPVFWGIGLQFLLGLLILRTRPGFVAFDWMGRQVQTFLG
YTDTGARFVFGEKYTDHFFAFKILPIVVFFSTVMSMLYYLGLMQWIIRKVGWLMLVTMGSSPIESVVAAG
NIFIGQTESPLLVQPYLPHVTKSELHTIMTAGFATIAGSVLGAYISFGVSSTHLLTASVMSAPAALAVAK
LFWPETEKPKITLKSAMKMENGDSRNLLEAASQGASSSIPLVANIAANLIAFLALLSFVNSALSWFGSMF
NYPELSFELICSYIFMPFSFMMGVDWQDSFMVAKLIGYKTFFNEFVAYDHLSKLINLRKAAGPKFVNGVQ
QYMSIRSETIATYALCGFANFGSLGIVIGGLTSIAPSRKRDIASGAMRALIAGTIACFMTACIAGILSDT
PVDINCHHVLENGRVLSNTTEVVSCCQNLFNSTVAKGPNDVVPGGNFSLYALKSCCNLLKPPTLNCNWIP
NKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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