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Report for CCDS26569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26569.1 Public Mus musculus 13 Ubqln1 23 108 98 CCDS HistoryNCBI Gene:56085Re-query CCDS DB by CCDS ID:26569.1Re-query CCDS DB by GeneID:56085See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076454.7 ENSMUSP00000075782.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076454.7Link to Ensembl Protein Viewer:ENSMUSP00000075782.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076454Re-query CCDS DB by Protein ID:ENSMUSP00000075782
Original member Current member NCBI NM_152234.2 NP_689420.1 Accepted alive Link to Nucleotide Sequence:NM_152234.2Link to Protein Sequence:NP_689420.1Re-query CCDS DB by Nucleotide ID:NM_152234Re-query CCDS DB by Protein ID:NP_689420Link to BLAST:NP_689420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689420.1 554 Q8R317-2 554 100% 0 0

Chromosomal Locations for CCDS 26569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 58177876 58178028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58179228 58179393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58179553 58179668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58183182 58183324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58191722 58191965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58192077 58192235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58193252 58193514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58196557 58196672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58198919 58199070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 58215284 58215436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGCCGAGAGCGCAGAGAGCGGCGGCCCACCGGGCGCGCAGGACAGTGCGGCCGACGGCGGCCCCGCAG
AGCCCAAGATCATGAAGGTCACGGTGAAGACGCCTAAAGAGAAGGAGGAGTTTGCCGTGCCCGAGAACAG
CTCGGTCCAGCAGTTCAAAGAGGAAATCTCTAAACGTTTCAAATCTCATATTGACCAACTTGTGTTGATA
TTTGCTGGAAAAATTTTAAAAGATCAAGATACTCTGAGTCAGCATGGGATTCATGATGGACTTACGGTTC
ACCTTGTCATCAAAACACAGAACAGGCCGCAAGATAATTCAGCTCAGCAAACAAATGCCCCTGGAAGCAC
TGTGACCAGCTCACCAGCTCCCGATAGCAACCCCACGTCTGGTTCTGCTGCTAACAGCTCCTTTGGCGTA
GGCGGACTTGGAGGACTTGCAGGTCTTAGCAGCTTGGGTTTAAACACCACCAACTTCTCTGAACTCCAGA
GCCAAATGCAGCGGCAACTTTTGTCTAACCCTGAAATGATGGTCCAGATCATGGAAAATCCCTTTGTCCA
GAGCATGCTCTCAAATCCTGACCTGATGCGGCAATTGATTATGGCCAATCCACAGATGCAACAGTTGATA
CAGAGAAATCCAGAGATTAGTCATATGCTTAATAATCCAGATATAATGAGACAAACACTGGAACTTGCGA
GAAATCCAGCGATGATGCAGGAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACCTAGAAAGTATTCC
TGGGGGCTATAATGCCTTACGGCGCATGTACACCGATATCCAGGAGCCTATGCTGAATGCTGCTCAAGAA
CAGTTTGGTGGTAATCCATTTGCGTCCTTAGTGAGCAGTTCGTCCTCAGCAGAAGGGACTCAGCCTTCTC
GAACAGAAAATAGGGATCCGCTCCCCAACCCGTGGGCTCCGCAGACTTCCCAGAGCTCACCAGCCTCCGG
TACCACTGGCAGCACCACTAACACCATGAGCACCTCTGGTGGCACTGCCACCAGTACCCCTGCTGGACAG
AGCACCTCGGGCCCAAGCTTGGTGCCTGGCGCAGGAGCTAGTATGTTCAACACCCCCGGAATGCAGAGCC
TGCTGCAGCAGATAACTGAGAACCCACAGCTCATGCAGAACATGCTGTCCGCCCCATACATGAGGAGCAT
GCTGCAGTCCCTGAGCCAGAACCCCGACCTTGCTGCGCAGATGCAGAACCCCGACACGCTCTCAGCGATG
TCGAATCCTAGAGCCATGCAGGCGCTGCTGCAGATCCAGCAGGGCTTGCAGACGCTGGCCACAGAAGCTC
CTGGCCTCATCCCAGGGTTTACTCCTGGCTTGGCAGCAGGCAATTCTGGAGGCTCTTCCGGAACCAATGC
ACCTAGCACTGCACCTAGTGAAGATACGAACCCCCAAGGGGGCACTGCTGAGCCAGGCCACCAGCAGTTT
ATCCAGCAGATGCTGCAGGCCCTTGCGGGGGTGAATCCTCAGCTGCAGAGTCCAGAAGTCAGATTTCAGC
AACAACTGGAACAACTCAGTGCCATGGGATTCTTGAACCGTGAAGCAAACCTGCAAGCTCTGATAGCCAC
AGGGGGCGACATCAATGCAGCAATCGAAAGGTTGCTGGGCTCCCAGCCGTCATAG

Translation (554 aa):
MAESAESGGPPGAQDSAADGGPAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHIDQLVLI
FAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDNSAQQTNAPGSTVTSSPAPDSNPTSGSAANSSFGV
GGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLI
QRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQE
QFGGNPFASLVSSSSSAEGTQPSRTENRDPLPNPWAPQTSQSSPASGTTGSTTNTMSTSGGTATSTPAGQ
STSGPSLVPGAGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMLQSLSQNPDLAAQMQNPDTLSAM
SNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLAAGNSGGSSGTNAPSTAPSEDTNPQGGTAEPGHQQF
IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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