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Report for CCDS2654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2654.1 Public Homo sapiens 3 DYNC1LI1 24 110 108 CCDS HistoryNCBI Gene:51143Re-query CCDS DB by CCDS ID:2654.1Re-query CCDS DB by GeneID:51143See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273130.9 ENSP00000273130.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273130.9Link to Ensembl Protein Viewer:ENSP00000273130.4Re-query CCDS DB by Nucleotide ID:ENST00000273130Re-query CCDS DB by Protein ID:ENSP00000273130
Original member Current member NCBI NM_016141.4 NP_057225.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016141.4Link to Protein Sequence:NP_057225.2Re-query CCDS DB by Nucleotide ID:NM_016141Re-query CCDS DB by Protein ID:NP_057225Link to BLAST:NP_057225.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057225.2 523 Q9Y6G9 523 100% 0 0

Chromosomal Locations for CCDS 2654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 32526799 32526908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32528446 32528601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32529540 32529660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32530284 32530328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32530461 32530520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32532986 32533097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32534511 32534646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32537011 32537104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32541037 32541206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32544876 32545106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32545849 32545965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32570346 32570419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 32570625 32570770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGCGGCCGTGGGGCGAGTCGGCTCCTTCGGTTCTTCTCCGCCGGGATTATCCTCGACTTACACTGGCG
GCCCCTTGGGCAACGAGATAGCGTCGGGCAACGGTGGCGCCGCGGCAGGCGACGACGAGGACGGGCAGAA
CCTTTGGTCCTGCATCCTCAGCGAGGTCTCCACCCGCTCGCGCTCCAAGCTCCCTGCGGGGAAGAACGTG
CTACTGCTGGGTGAAGATGGAGCTGGAAAAACAAGCTTAATAAGAAAAATTCAGGGAATAGAGGAGTATA
AGAAAGGAAGAGGATTGGAATATTTGTACTTAAATGTGCATGATGAAGACAGGGATGATCAAACAAGATG
TAATGTTTGGATCTTAGATGGAGACCTATATCACAAAGGCCTCCTTAAATTTTCACTGGATGCCGTATCT
CTGAAGGATACTCTAGTTATGCTGGTTGTTGACATGTCAAAGCCTTGGACTGCTTTGGATTCTTTACAGA
AATGGGCAAGTGTTGTTAGAGAACATGTTGACAAACTGAAAATCCCTCCTGAAGAAATGAAACAAATGGA
ACAAAAGTTGATTAGAGACTTCCAAGAATATGTAGAGCCAGGAGAAGACTTCCCGGCTTCTCCCCAGAGA
AGAAATACTGCGTCACAAGAAGACAAAGATGACAGTGTAGTTTTACCTCTGGGTGCGGATACACTTACAC
ATAACTTGGGCATTCCAGTACTAGTAGTTTGCACAAAGTGTGATGCCATTAGTGTATTGGAGAAAGAACA
TGACTACAGAGATGAACATTTTGATTTTATTCAGTCACATATCCGGAAGTTTTGTTTACAGTATGGTGCA
GCACTTATTTACACTTCAGTAAAAGAAAACAAAAATATAGACTTAGTATATAAATACATCGTTCAGAAAC
TATATGGATTTCCCTATAAGATTCCTGCTGTTGTTGTGGAAAAGGATGCAGTATTTATTCCAGCAGGGTG
GGATAATGATAAGAAAATAGGAATATTACATGAAAATTTTCAAACATTAAAAGCAGAAGATAATTTTGAA
GACATCATAACTAAACCACCTGTTCGAAAGTTTGTACATGAGAAGGAAATTATGGCAGAAGATGATCAGG
TGTTTCTTATGAAGCTACAGTCCCTTTTAGCAAAGCAACCACCAACTGCAGCTGGAAGGCCTGTGGATGC
CTCACCAAGAGTCCCAGGAGGCTCCCCACGAACACCAAATAGATCTGTATCATCTAATGTTGCCAGCGTG
TCACCCATTCCTGCTGGGTCAAAAAAAATTGATCCAAACATGAAAGCTGGAGCTACAAGTGAAGGCGTTC
TGGCAAATTTCTTCAACAGTTTGTTGAGTAAAAAGACTGGCTCTCCAGGAGGCCCTGGTGTGAGTGGTGG
TAGCCCTGCAGGTGGGGCTGGAGGTGGAAGCAGTGGTTTACCACCATCCACCAAAAAGTCAGGCCAGAAG
CCTGTCTTAGATGTTCATGCAGAACTAGACAGAATTACACGAAAACCAGTTACAGTTTCTCCCACAACAC
CTACATCTCCTACGGAAGGAGAAGCTTCTTGA

Translation (523 aa):
MAAVGRVGSFGSSPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNV
LLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLLKFSLDAVS
LKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIRDFQEYVEPGEDFPASPQR
RNTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDFIQSHIRKFCLQYGA
ALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGWDNDKKIGILHENFQTLKAEDNFE
DIITKPPVRKFVHEKEIMAEDDQVFLMKLQSLLAKQPPTAAGRPVDASPRVPGGSPRTPNRSVSSNVASV
SPIPAGSKKIDPNMKAGATSEGVLANFFNSLLSKKTGSPGGPGVSGGSPAGGAGGGSSGLPPSTKKSGQK
PVLDVHAELDRITRKPVTVSPTTPTSPTEGEAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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