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Report for CCDS26521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26521.1 Public Mus musculus 13 Sptlc1 23 108 98 CCDS HistoryNCBI Gene:268656Re-query CCDS DB by CCDS ID:26521.1Re-query CCDS DB by GeneID:268656See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021920.7 ENSMUSP00000021920.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021920.7Link to Ensembl Protein Viewer:ENSMUSP00000021920.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021920Re-query CCDS DB by Protein ID:ENSMUSP00000021920
Original member NCBI NM_009269.2 NP_033295.2 Updated not alive Link to Nucleotide Sequence:NM_009269.2Link to Protein Sequence:NP_033295.2Re-query CCDS DB by Nucleotide ID:NM_009269Re-query CCDS DB by Protein ID:NP_033295
Current member NCBI NM_009269.3 NP_033295.2 Accepted alive Link to Nucleotide Sequence:NM_009269.3Link to Protein Sequence:NP_033295.2Re-query CCDS DB by Nucleotide ID:NM_009269Re-query CCDS DB by Protein ID:NP_033295Link to BLAST:NP_033295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033295.2 473 O35704 473 100% 0 0

Chromosomal Locations for CCDS 26521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 53333884 53333977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53335341 53335414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53337608 53337725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53342172 53342226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53343128 53343224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53343779 53343874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53344801 53344908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53351601 53351690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53354151 53354280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53358761 53358893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53367312 53367384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53367866 53367959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53373329 53373423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53373962 53374069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 53377293 53377349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGACAGTGGCGGAGCAGTGGGTGCTGGTGGAGATGGTGCAGGCGCTGTACGAGGCTCCAGCATACC
ATCTTATTTTGGAAGGAATCCTAATACTTTGGATAATCAGACTCGTTTTCTCTAAAACTTACAAGTTGCA
GGAGCGTTCTGATCTTACAGCCAAGGAAAAGGAAGAACTGATTGAAGAGTGGCAGCCAGAGCCCCTCGTC
CCTCCAGTCTCCAAGAACCACCCTGCTCTCAACTACAACATCGTGTCCGGCCCTCCAACCCACAACATCG
TGGTGAATGGAAAAGAGTGTGTCAACTTTGCCTCCTTTAACTTCCTTGGGCTGCTGGCCAACCCTCGAGT
TAAGGCCACAGCTTTTTCATCTTTAAAGAAGTACGGAGTGGGTACCTGTGGTCCTCGAGGGTTCTATGGC
ACATTTGATGTCCATCTGGATTTAGAAGAGCGCCTGGCAAAGTTTATGAAGACCGAAGAAGCCATCATTT
ACTCGTATGGCTTCTCCACCATAGCCAGTGCCATTCCTGCGTACTCTAAGAGAGGGGACATCATCTTTGT
GGACAGTGCGGCCTGCTTTGCTATCCAGAAAGGATTACAGGCATCAAGAAGTGACATTAAGTTATTTAAG
CATAATGATGTGGCTGACCTGGAGCGACTGCTAAAAGAACAAGAGATTGAAGATCAAAAGAATCCTCGCA
AGGCCCGTGTGACTCGGCGGTTCATCGTGGTGGAGGGCTTGTACATGAACACTGGAACCATCTGTCCCCT
TCCAGAACTGGTTAAATTAAAATATAAATATAAAGCAAGAATATTCCTGGAGGAGAGCCTGTCCTTTGGA
GTCCTTGGGGAGCACGGGCGAGGAGTCACCGAGCACTATGGGATCAGTATTGATGATATTGACCTTATCA
GTGCTAACATGGAGAATGCACTCGCTTCTGTCGGGGGCTTCTGCTGTGGCCGCTCCTTCGTGGTTGACCA
TCAGCGGCTCTCCGGTCAAGGATACTGCTTTTCTGCTTCGTTACCTCCCCTGCTAGCTGCTGCTGCCATT
GAGGCCCTCAACATCATGGAAGAGAATCCAGATATTTTTGCAGTTTTAAAGAAAAAATGCCAGAACATCC
ATAAGTCTCTACAAGGTGTTTCGGGTTTAAAAGTGGTGGGAGAGTCCCTTTCTCCGGCGCTTCATCTCCA
GCTGGAAGAGAGCACGGGCTCTCGGGAGAAAGATGTGAAGCTGCTTCAAGCAATCGTAGATCAGTGCATG
GATAAGGGCATCGCATTGACTCAGGCACGGTACTTGGACAAGGAAGAGAAGTGCCTTCCTCCTCCAAGCA
TCAGGGTTGTGGTCACTGTGGAGCAGACGGAGGAAGAGCTACAGAGGGCTGCATCCACCATCAGGGAGGC
GGCCCAGGCTGTGCTGTTGTAG

Translation (473 aa):
MATVAEQWVLVEMVQALYEAPAYHLILEGILILWIIRLVFSKTYKLQERSDLTAKEKEELIEEWQPEPLV
PPVSKNHPALNYNIVSGPPTHNIVVNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYG
TFDVHLDLEERLAKFMKTEEAIIYSYGFSTIASAIPAYSKRGDIIFVDSAACFAIQKGLQASRSDIKLFK
HNDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFG
VLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLSGQGYCFSASLPPLLAAAAI
EALNIMEENPDIFAVLKKKCQNIHKSLQGVSGLKVVGESLSPALHLQLEESTGSREKDVKLLQAIVDQCM
DKGIALTQARYLDKEEKCLPPPSIRVVVTVEQTEEELQRAASTIREAAQAVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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