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Report for CCDS26489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26489.1 Public Mus musculus 13 Kdm1b 23 108 98 CCDS HistoryNCBI Gene:218214Re-query CCDS DB by CCDS ID:26489.1Re-query CCDS DB by GeneID:218214See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037025.15 ENSMUSP00000038373.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037025.15Link to Ensembl Protein Viewer:ENSMUSP00000038373.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037025Re-query CCDS DB by Protein ID:ENSMUSP00000038373
Original member NCBI NM_172262.3 NP_758466.1 Updated not alive Link to Nucleotide Sequence:NM_172262.3Link to Protein Sequence:NP_758466.1Re-query CCDS DB by Nucleotide ID:NM_172262Re-query CCDS DB by Protein ID:NP_758466
Current member NCBI NM_172262.4 NP_758466.1 Accepted alive Link to Nucleotide Sequence:NM_172262.4Link to Protein Sequence:NP_758466.1Re-query CCDS DB by Nucleotide ID:NM_172262Re-query CCDS DB by Protein ID:NP_758466Link to BLAST:NP_758466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758466.1 826 Q8CIG3-1 826 100% 0 0

Chromosomal Locations for CCDS 26489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 47047916 47048002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47049178 47049305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47050610 47050699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47051789 47051900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47053619 47053735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47058776 47058814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47060753 47060981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47062958 47063142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47064054 47064230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47064571 47064645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47067445 47067582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47068464 47068635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47071892 47072019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47073711 47073842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47074354 47074428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47077383 47077499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47078268 47078393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47079183 47079299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47080436 47080588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47082875 47082958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2481 nt):
ATGGCCGCATCTCGAGGGAGGTCAAAGAAGAGAAGCAATTTGGAGCTTTCTCCTGATAACCTGCCTTTGA
GGAGCTCTGGGCGGCAGGCAAAGAAGAAAGCAGTAGAGATCCCGGATGAGGATGAAGATGGTTCGTCGGA
GAAGAAGTACCGGAAATGTGAAAAGGCAGGCTGTACGGCGGCGTACCCTGTGTGCTTTGCAAGCGCTTCT
GAAAGATGTGCCAAAAATGGTTACACCTCCCGATGGTATCACCTTTCCTGTGGGGAACACTTCTGCAATG
AATGCTTTGACCACTACTACAGAAGCCACAAAGATGGGTATGACAAATACAGTGCATGGAAAAGAGTGTG
GACCAGCAACGGCAAGACGGAGCCAAGCCCCAAGGCGTTCATGGCAGACCAGCAGCTGCCCTACTGGGTG
CAGTGCACAAAACCCGAGTGTGGAAAGTGGAGGCAGCTGACCAAGGAGATCCAGCTTACTCCACACATGG
CGAGGACTTACCGCTGTGGCATGAAGCCAAATACTATTACCAAGCCTGACACCCCCGATCATTGTTCTTT
CCCCGAGGATCTGAGAGTGCTGGAAGTTTCCAACCACTGGTGGTACCCCATGCTCATCCAGCCTCCGTTG
CTGAAGGACAGTGTGGCAGCACCGCTGCTTTCTGCCTACTACCCCGACTGCGTTGGCATGAGCCCCTCCT
GCACCAGCACACATCGTGCCACCGTCACAGCTGCTACCACAACCACCGGCAGTGCCAGCCCGGGGGAGAT
GGAGCCCTCCAAGGCAGCCCCCTCTTCACTTGTCCTAGGCATGAACCGGTACTTCCAGCCGTTCTACCAG
CCCAACGAGTGTGGGAAAGCGCTGTGCGTGAGGCCAGACGTGATGGAGCTGGATGAGCTCTACGAGTTCC
CAGAGTATTCGCGGGACCCCACCATGTACCTGGCTTTGAGAAACCTCATCCTCGCACTGTGGTACACAAA
CTGCAAAGAAGCTCTCACCCCTCAGAAGTGCATTCCCCACATCATTGTCCGGGGCCTTGTCCGCATCAGA
TGCGTTCAGGAAGTGGAGAGGATTCTTTACTTCATGACGAGGAAAGGCCTCATCAACACAGGCGTTCTCA
CGGTGGCAGCCGGCCAGCATCTTCTTCCTAAACACTACCACAATAAATCTGTTCTGGTTGTTGGGGCTGG
TCCAGCAGGCTTAGCAGCTGCTAGGCAACTGCATAACTTTGGGATGAAGGTGACTGTCCTGGAAGCCAAA
GACCGGATTGGAGGCCGAGTATGGGATGACAAGTCCTTTAAAGGCGTGGTAGTAGGAAGAGGACCCCAGA
TTGTCAATGGCTGTATTAATAACCCAGTAGCACTAATGTGTGAGCAACTTGGCATCAGCATGCGTAAGTT
GGGAGAGAGATGTGACTTAATTCAGGAAGGTGGACGGATAACTGACCCCACTGTTGACAAACGCATGGAC
TTTCATTTTAATGCTCTCTTGGATGTTGTCTCTGAGTGGAGGAAGGATAAGACTCTGCTCCAAGATGTCC
CTTTAGGAGAGAAGATAGAGGAGATCTACCGAGCTTTTGTGAAGGAGTCTGGCATCCAGTTCAGCGAGCT
GGAGGGACAGGTGCTGCAGTTCCACCTGAGTAACCTGGAGTATGCTTGTGGCAGCAGCCTGCACCAGGTG
TCTGCTCGCTCCTGGGATCACAATGAATTCTTTGCCCAGTTTGCTGGTGACCATACCCTCCTCACACCAG
GCTACTCCACTATCATTGAGAAACTGGCTGAAGGACTAGACATTCGACTCAAATCTCCAGTGCAAAGTAT
AGATTATACTGGAGATGAAGTGCAGGTTACCACGACAGATGGTATGGGGCATTCTGCACAAAAGGTGTTA
GTCACTGTGCCATTGGCCATACTACAGAGAGGTGCCATCCAGTTTAATCCACCATTGTCAGAAAAGAAGA
TGAAAGCCATCAACAGCTTGGGTGCAGGCATCATTGAAAAGATTGCCTTGCAGTTTCCATATAGATTTTG
GGACAGTAAAGTTCAAGGAGCTGACTTTTTTGGCCATGTTCCTCCCAGTGCCAGCCAACGAGGCCTCTTC
GCTGTATTCTATGACATGGACTCTCAGCAGAGTGTGCTGATGTCGGTGATCACAGGGGAGGCAGTGGCGT
CCCTCAGGACCATGGATGACAAGCAGGTGCTGCAGCAGTGCATGGGCATCCTTCGGGAGCTGTTCAAGGA
GCAGGAGATCCCAGAACCCACAAAGTATTTTGTCACACGGTGGAGCACAGAGCCATGGATCCAGATGGCA
TATAGTTTCGTGAAGACCTTTGGAAGTGGCGAGGCCTATGATATTATTGCTGAAGAAATACAAGGAACTG
TCTTTTTTGCTGGTGAGGCAACAAACAGGCATTTCCCACAAACTGTTACTGGGGCATATTTAAGTGGTGT
ACGAGAAGCAAGCAAGATTGCAGCCTTTTAA

Translation (826 aa):
MAASRGRSKKRSNLELSPDNLPLRSSGRQAKKKAVEIPDEDEDGSSEKKYRKCEKAGCTAAYPVCFASAS
ERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYSAWKRVWTSNGKTEPSPKAFMADQQLPYWV
QCTKPECGKWRQLTKEIQLTPHMARTYRCGMKPNTITKPDTPDHCSFPEDLRVLEVSNHWWYPMLIQPPL
LKDSVAAPLLSAYYPDCVGMSPSCTSTHRATVTAATTTTGSASPGEMEPSKAAPSSLVLGMNRYFQPFYQ
PNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIR
CVQEVERILYFMTRKGLINTGVLTVAAGQHLLPKHYHNKSVLVVGAGPAGLAAARQLHNFGMKVTVLEAK
DRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPVALMCEQLGISMRKLGERCDLIQEGGRITDPTVDKRMD
FHFNALLDVVSEWRKDKTLLQDVPLGEKIEEIYRAFVKESGIQFSELEGQVLQFHLSNLEYACGSSLHQV
SARSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVL
VTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLF
AVFYDMDSQQSVLMSVITGEAVASLRTMDDKQVLQQCMGILRELFKEQEIPEPTKYFVTRWSTEPWIQMA
YSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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