NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26471.1 Public Mus musculus 13 Mak 23 108 98 CCDS HistoryNCBI Gene:17152Re-query CCDS DB by CCDS ID:26471.1Re-query CCDS DB by GeneID:17152See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021792.4 ENSMUSP00000021792.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021792.4Link to Ensembl Protein Viewer:ENSMUSP00000021792.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021792Re-query CCDS DB by Protein ID:ENSMUSP00000021792
Original member Current member NCBI NM_008547.2 NP_032573.2 Accepted alive Link to Nucleotide Sequence:NM_008547.2Link to Protein Sequence:NP_032573.2Re-query CCDS DB by Nucleotide ID:NM_008547Re-query CCDS DB by Protein ID:NP_032573Link to BLAST:NP_032573.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032573.2 622 Q04859-1 622 100% 0 0

Chromosomal Locations for CCDS 26471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41026408 41026562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41030017 41030139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41034754 41034885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41039629 41039777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41042019 41042185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41046019 41046330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41048053 41048220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41049308 41049479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41051370 41051502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41053295 41053374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41055694 41055815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41056603 41056657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41070137 41070237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGAACCGATACACAACCATGAAGCAGCTGGGAGACGGCACGTATGGGAGTGTACTGATGGGCAAGAGCA
ATGAGTCTGGGGAGCTGGTGGCAATCAAGAGGATGAAGAGAAAGTTCTATTCTTGGGATGAGTGTATGAA
CTTGCGAGAAGTTAAGTCCCTGAAAAAACTCAATCACGCCAATGTGATTAAACTAAAAGAAGTTATCAGA
GAGAATGACCATCTTTATTTTGTATTTGAATATATGAAAGAAAACCTCTATCAGCTAATGAAAGACAGAA
ACAAACTGTTCCCTGAGTCAGTCATCAGAAATATTATGTATCAGATACTACAGGGGCTGGCATTTATCCA
TAAACACGGCTTTTTTCACAGGGACATGAAACCTGAGAACTTGCTCTGCATGGGCCCAGAGCTGGTGAAG
ATTGCTGATTTTGGACTTGCAAGAGAATTAAGATCACAGCCACCATATACTGACTATGTGTCTACCAGAT
GGTACCGGGCTCCTGAAGTCTTACTAAGGTCTTCGGTGTACAGCTCTCCCATTGACGTGTGGGCCGTGGG
AAGTATAATGGCCGAGTTATATACATTTAGGCCGCTTTTCCCAGGGACAAGTGAAGTTGATGAGATCTTT
AAAATCTGCCAAGTGTTAGGGACTCCCAAGAAGAGTGACTGGCCGGAAGGATACCAGCTTGCATCCTCCA
TGAACTTCCGCTTTCCCCAGTGCATTCCCATCAACCTAAAAACTCTCATTCCCAATGCCAGTAGCGAGGC
CATCCAGCTCATGACAGAGATGCTGAACTGGGATCCAAAGAAGCGACCAACAGCAAGCCAGGCACTGAAA
CACCCATATTTCCAAGTCGGTCAGGTACTGGGCTCTTCTGCACACCATCTGGATACAAAACAGACTTTAC
ACAAGCAGCTGCAGCCTCTGGAGCCAAAGCCATCTTCCTCTGAACGGGATCCTAAGCCTTTGCCAAACAT
ACTTGATCAGCCTGCCGGGCAGCCCCAGCCAAAACAGGGCCACCAACCACTGCAGACCATTCAGCCACCA
CAGAACACAGTGACTCACCCACCCCCAAAGCAGCAGGGTCACCAGAAACCACCACAAACCATGTTTCCAA
GTATCATCAAAACCATCCCAGTGAATTCAGTCAGCACCCTGGGCCATAAGGGAGCCCGGAGACGGTGGGG
TCAGACAGTCTTCAAGTCTGGAGACAGCTGTGACGACATTGAGGACGACTTAGGAGCCTCCCACTCCAAG
AAGCCAAGCATGGAAGCCTGCAAGGAGAAGAAGAAGGAGTCTCCATTTCGGTTTCCAGATTCAGGACTCC
CAGTCTCCAATCACTTTAAGGGGGAAAATAGGAATTTACATGCATCTGTTTCCTTAAAATCTGATCCAAA
CTTGTCAACTGCTTCAACGGCTAAGCAGTACTATTTGAAACAATCAAGATACCTTCCAGGTGTGAACCCC
AAGAATGTGTCTTTGGTAGCTGGAGGCAAGGATATAAATTCACACTCTTGGAATAATCAGCTATTTCCTA
AGTCGCTGGGATCCATGGGGGCGGACCTTTCCTTCAAGAGGAGTAACGCAGCAGGAAACCTTGGGAGCTA
CACCACTTACAACCAGACGGGATACATGCCTTCCTTTCTCAAGAAAGAAGTGGGATCAGCTGGCCAGAGG
ATCCAATTGGCACCTTTAGGTGCGTCGGCTTCGGACTATACCTGGAGCACAAAAACTGGACGAGGCCAGT
TTTCGGGACGAACTTACAACCCCACAGCCAAAAATCTCAATATTGTGAACCGCACACAGCCAGTCCCCTC
GGTACACGGGAGGACAGACTGGGTGGCTAAGTATGGAGGCCACCGGTAG

Translation (622 aa):
MNRYTTMKQLGDGTYGSVLMGKSNESGELVAIKRMKRKFYSWDECMNLREVKSLKKLNHANVIKLKEVIR
ENDHLYFVFEYMKENLYQLMKDRNKLFPESVIRNIMYQILQGLAFIHKHGFFHRDMKPENLLCMGPELVK
IADFGLARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSPIDVWAVGSIMAELYTFRPLFPGTSEVDEIF
KICQVLGTPKKSDWPEGYQLASSMNFRFPQCIPINLKTLIPNASSEAIQLMTEMLNWDPKKRPTASQALK
HPYFQVGQVLGSSAHHLDTKQTLHKQLQPLEPKPSSSERDPKPLPNILDQPAGQPQPKQGHQPLQTIQPP
QNTVTHPPPKQQGHQKPPQTMFPSIIKTIPVNSVSTLGHKGARRRWGQTVFKSGDSCDDIEDDLGASHSK
KPSMEACKEKKKESPFRFPDSGLPVSNHFKGENRNLHASVSLKSDPNLSTASTAKQYYLKQSRYLPGVNP
KNVSLVAGGKDINSHSWNNQLFPKSLGSMGADLSFKRSNAAGNLGSYTTYNQTGYMPSFLKKEVGSAGQR
IQLAPLGASASDYTWSTKTGRGQFSGRTYNPTAKNLNIVNRTQPVPSVHGRTDWVAKYGGHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH