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Report for CCDS2643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2643.1 Public Homo sapiens 3 OXSM 24 110 108 CCDS HistoryNCBI Gene:54995Re-query CCDS DB by CCDS ID:2643.1Re-query CCDS DB by GeneID:54995See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2643.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280701.8 ENSP00000280701.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280701.8Link to Ensembl Protein Viewer:ENSP00000280701.3Re-query CCDS DB by Nucleotide ID:ENST00000280701Re-query CCDS DB by Protein ID:ENSP00000280701
Original member Current member NCBI NM_017897.3 NP_060367.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017897.3Link to Protein Sequence:NP_060367.1Re-query CCDS DB by Nucleotide ID:NM_017897Re-query CCDS DB by Protein ID:NP_060367Link to BLAST:NP_060367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060367.1 459 Q9NWU1-1 459 100% 0 0

Chromosomal Locations for CCDS 2643.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 25791021 25791997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25794092 25794494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGTCCAACTGCCTGCAAAATTTCCTGAAAATTACAAGCACTCGTCTTCTATGTTCAAGATTATGCCAAC
AGTTAAGAAGTAAAAGGAAGTTTTTCGGAACTGTGCCAATATCCAGATTGCATAGGCGAGTTGTCATTAC
AGGCATTGGCTTAGTGACTCCTCTTGGTGTTGGAACTCACCTGGTTTGGGATCGTCTTATCGGAGGAGAG
AGTGGAATTGTTTCACTGGTTGGTGAAGAGTATAAGAGTATCCCTTGCAGTGTTGCTGCTTATGTGCCAA
GAGGTAGTGATGAAGGTCAGTTCAATGAACAAAACTTTGTGTCCAAATCAGATATCAAGTCCATGTCTTC
TCCCACCATCATGGCCATTGGGGCTGCAGAATTAGCCATGAAGGATTCTGGCTGGCATCCTCAGTCAGAA
GCTGATCAAGTGGCTACTGGTGTTGCAATTGGCATGGGAATGATTCCTCTTGAAGTTGTTTCTGAAACTG
CTTTGAATTTTCAGACAAAAGGTTACAATAAAGTTAGCCCATTTTTTGTCCCTAAGATTCTGGTCAATAT
GGCAGCAGGCCAGGTCAGCATTCGATATAAACTCAAGGGCCCAAATCATGCAGTATCCACAGCCTGTACC
ACAGGAGCTCATGCTGTGGGAGACTCATTTAGATTTATAGCCCATGGTGATGCTGATGTGATGGTGGCTG
GAGGTACAGATTCTTGTATTAGCCCTTTATCTCTTGCTGGGTTTTCCAGAGCCCGGGCTCTGAGCACAAA
CTCAGATCCCAAGTTGGCATGTCGACCATTTCATCCAAAGAGAGATGGTTTTGTAATGGGAGAAGGTGCA
GCTGTGCTGGTGCTGGAAGAATATGAACATGCTGTTCAAAGAAGAGCCCGGATCTATGCAGAAGTTTTGG
GCTATGGACTCTCAGGTGATGCTGGTCACATAACTGCCCCTGATCCTGAAGGAGAAGGTGCCTTAAGGTG
TATGGCTGCTGCTTTAAAAGATGCAGGTGTGCAGCCTGAGGAGATATCCTATATCAATGCACATGCTACT
TCCACACCATTGGGAGATGCTGCTGAAAACAAAGCTATCAAACATCTCTTCAAAGACCATGCATATGCCC
TTGCAGTTTCCTCAACTAAGGGAGCAACAGGACATCTGCTGGGAGCTGCAGGGGCAGTCGAGGCAGCTTT
TACCACATTAGCTTGTTATTATCAAAAACTACCACCTACTTTAAACCTGGATTGTTCGGAACCAGAATTT
GATCTCAACTATGTTCCACTAAAGGCACAGGAATGGAAAACTGAGAAAAGATTTATTGGCCTCACCAATT
CCTTTGGTTTTGGTGGTACTAATGCAACACTTTGTATTGCTGGACTGTAG

Translation (459 aa):
MSNCLQNFLKITSTRLLCSRLCQQLRSKRKFFGTVPISRLHRRVVITGIGLVTPLGVGTHLVWDRLIGGE
SGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSE
ADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACT
TGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKRDGFVMGEGA
AVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHAT
STPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEF
DLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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