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Report for CCDS26376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26376.1 Public Mus musculus 13 Cmah 23 108 98 CCDS HistoryNCBI Gene:12763Re-query CCDS DB by CCDS ID:26376.1Re-query CCDS DB by GeneID:12763See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050859.12 ENSMUSP00000061045.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050859.12Link to Ensembl Protein Viewer:ENSMUSP00000061045.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050859Re-query CCDS DB by Protein ID:ENSMUSP00000061045
Original member Current member EBI ENSMUST00000110391.3 ENSMUSP00000106021.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110391.3Link to Ensembl Protein Viewer:ENSMUSP00000106021.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110391Re-query CCDS DB by Protein ID:ENSMUSP00000106021
Original member Current member EBI ENSMUST00000167746.7 ENSMUSP00000129007.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167746.7Link to Ensembl Protein Viewer:ENSMUSP00000129007.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167746Re-query CCDS DB by Protein ID:ENSMUSP00000129007
Original member Current member EBI ENSMUST00000224657.1 ENSMUSP00000153495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224657.1Link to Ensembl Protein Viewer:ENSMUSP00000153495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224657Re-query CCDS DB by Protein ID:ENSMUSP00000153495
Original member Current member EBI ENSMUST00000224953.1 ENSMUSP00000153652.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224953.1Link to Ensembl Protein Viewer:ENSMUSP00000153652.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224953Re-query CCDS DB by Protein ID:ENSMUSP00000153652
Original member Current member NCBI NM_001111110.2 NP_001104580.1 Accepted alive Link to Nucleotide Sequence:NM_001111110.2Link to Protein Sequence:NP_001104580.1Re-query CCDS DB by Nucleotide ID:NM_001111110Re-query CCDS DB by Protein ID:NP_001104580Link to BLAST:NP_001104580.1
Original member Current member NCBI NM_001284519.1 NP_001271448.1 Accepted alive Link to Nucleotide Sequence:NM_001284519.1Link to Protein Sequence:NP_001271448.1Re-query CCDS DB by Nucleotide ID:NM_001284519Re-query CCDS DB by Protein ID:NP_001271448Link to BLAST:NP_001271448.1
Original member Current member NCBI NM_007717.5 NP_031743.3 Accepted alive Link to Nucleotide Sequence:NM_007717.5Link to Protein Sequence:NP_031743.3Re-query CCDS DB by Nucleotide ID:NM_007717Re-query CCDS DB by Protein ID:NP_031743Link to BLAST:NP_031743.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104580.1 577 Q61419-1 577 100% 0 0
NP_001271448.1 577 Q61419-1 577 100% 0 0
NP_031743.3 577 Q61419-1 577 100% 0 0

Chromosomal Locations for CCDS 26376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24417000 24417010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24417224 24417424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24422600 24422691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24428829 24428938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24430488 24430678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24435100 24435247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24435607 24435688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24436620 24436757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24439122 24439257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24456879 24457019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24460152 24460326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24464209 24464325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24466760 24466875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24468547 24468622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGATGGACAGGAAACAGACAGCTGAGACCCTGCTGACCCTGTCTCCTGCTGAAGTTGCCAACCTCAAGG
AAGGGATCAATTTTTTTCGAAATAAGACTACTGGGAAAGAGTACATTTTATACAAGGAGAAGGACCATCT
AAAGGCATGCAAGAACCTCTGCAAGCACCAGGGAGGCCTGTTCATGAAAGACATCGAGGATTTAGATGGA
AGGTCCGTTAAATGCACAAAGCACAACTGGAAGTTAGACGTGAGCACCATGAAATATATCAACCCTCCAG
GGAGCTTCTGTCAAGACGAGCTCGTTATTGAAATGGATGAAAACAATGGGCTTTCCCTGGTAGAACTGAA
CCCTCCTAACCCCTGGGACTCTGATCCCAGGTCTCCTGAAGAATTAGCTTTTGGGGAAGTACAGATAACA
TATCTCACTCATGCCTGCATGGACCTCAAGTTGGGAGACAAGCGAATGGTATTTGACCCTTGGTTAATTG
GCCCTGCTTTTGCCCGAGGATGGTGGTTGCTACATGAGCCTCCATCTGACTGGTTGGAGAGGCTGTGCAA
AGCAGACCTCATTTATATCAGCCACATGCACTCAGACCACCTGAGCTACCCTACCCTGAAGCAGCTTTCC
CAGAGACGACCAGACATTCCCATTTATGTTGGCGACACAGAAAGGCCTGTGTTTTGGAACCTGGATCAGA
GTGGCGTCGGGTTAACTAACATCAACGTGGTTCCATTTGGAATATGGCAACAGGTAGACAAAAGTCTGCG
GTTCATGATCTTGATGGACGGCGTTCATCCTGAGATGGACACATGCATTATCGTGGAGTACAAAGGTCAT
AAAATACTCAACACAGTGGACTGCACCAGACCCAATGGGGGAAGGCTTCCTGAGAAAGTTGCTCTAATGA
TGAGTGATTTCGCAGGAGGTGCATCAGGCTTTCCAATGACTTTCAGTGGTGGAAAATTTACTGAGGAATG
GAAAGCCCAGTTCATTAAGGCTGAAAGAAGAAAGCTTCTGAATTACAAAGCTCAGCTGGTGAAGGACCTG
CAGCCCCGAATCTACTGTCCGTTTGCTGGGTACTTTGTGGAGTCTCACCCATCTGACAAGTACATTAAGG
AAACAAACACCAAAAATGACCCAAATCAGCTCAACAATCTTATCAGGAAAAACTCTGACGTGGTGACATG
GACCCCACGACCTGGCGCTGTCCTCGACCTTGGCAGGATGCTGAAGGACCCAACAGACAGCAAGGGCATT
GTGGAGCCTCCAGAGGGGACAAAGATTTACAAGGATTCCTGGGACTTTGGCCCGTACCTGGAGATCTTGA
ATTCTGCTGTCAGAGATGAAATCTTCTGTCATTCATCCTGGATTAAAGAGTACTTCACGTGGGCTGGATT
TAAGAATTACAACCTGGTGGTCAGGATGATTGAAACAGATGAAGATTTCAGCCCTTTTCCTGGAGGGTAC
GACTATCTGGTGGACTTTCTAGATTTATCCTTTCCGAAAGAAAGACCCAGCCGGGAGCATCCTTATGAAG
AAATCCATAGCCGGGTGGATGTCATCAGGTACGTGGTGAAGAACGGCCTGCTGTGGGATGATCTGTATAT
TGGATTCCAGACCCGATTGCTGCGGGACCCTGATATATACCATCATCTGTTTTGGAATCATTTTCAGATA
AAACTCCCTCTAACACCACCCAACTGGAAGTCGTTCCTAATGCACTGTGATTAG

Translation (577 aa):
MMDRKQTAETLLTLSPAEVANLKEGINFFRNKTTGKEYILYKEKDHLKACKNLCKHQGGLFMKDIEDLDG
RSVKCTKHNWKLDVSTMKYINPPGSFCQDELVIEMDENNGLSLVELNPPNPWDSDPRSPEELAFGEVQIT
YLTHACMDLKLGDKRMVFDPWLIGPAFARGWWLLHEPPSDWLERLCKADLIYISHMHSDHLSYPTLKQLS
QRRPDIPIYVGDTERPVFWNLDQSGVGLTNINVVPFGIWQQVDKSLRFMILMDGVHPEMDTCIIVEYKGH
KILNTVDCTRPNGGRLPEKVALMMSDFAGGASGFPMTFSGGKFTEEWKAQFIKAERRKLLNYKAQLVKDL
QPRIYCPFAGYFVESHPSDKYIKETNTKNDPNQLNNLIRKNSDVVTWTPRPGAVLDLGRMLKDPTDSKGI
VEPPEGTKIYKDSWDFGPYLEILNSAVRDEIFCHSSWIKEYFTWAGFKNYNLVVRMIETDEDFSPFPGGY
DYLVDFLDLSFPKERPSREHPYEEIHSRVDVIRYVVKNGLLWDDLYIGFQTRLLRDPDIYHHLFWNHFQI
KLPLTPPNWKSFLMHCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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