CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS26376.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26376.1 |
Public |
Mus musculus |
13 |
Cmah |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:12763](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26376.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:12763](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 26376.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000050859.12 |
ENSMUSP00000061045.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000050859.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000061045.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000050859](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000061045](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000110391.3 |
ENSMUSP00000106021.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000110391.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000106021.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000110391](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000106021](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000167746.7 |
ENSMUSP00000129007.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000167746.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000129007.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000167746](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000129007](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000224657.1 |
ENSMUSP00000153495.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000224657.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000153495.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000224657](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000153495](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000224953.1 |
ENSMUSP00000153652.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000224953.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000153652.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000224953](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000153652](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001111110.2 |
NP_001104580.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001111110.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001104580.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001111110](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001104580](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001104580.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001284519.1 |
NP_001271448.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001284519.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001271448.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001284519](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001271448](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001271448.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007717.5 |
NP_031743.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007717.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031743.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007717](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031743](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031743.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 26376.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1734 nt): ATGATGGACAGGAAACAGACAGCTGAGACCCTGCTGACCCTGTCTCCTGCTGAAGTTGCCAACCTCAAGG AAGGGATCAATTTTTTTCGAAATAAGACTACTGGGAAAGAGTACATTTTATACAAGGAGAAGGACCATCT AAAGGCATGCAAGAACCTCTGCAAGCACCAGGGAGGCCTGTTCATGAAAGACATCGAGGATTTAGATGGA AGGTCCGTTAAATGCACAAAGCACAACTGGAAGTTAGACGTGAGCACCATGAAATATATCAACCCTCCAG GGAGCTTCTGTCAAGACGAGCTCGTTATTGAAATGGATGAAAACAATGGGCTTTCCCTGGTAGAACTGAA CCCTCCTAACCCCTGGGACTCTGATCCCAGGTCTCCTGAAGAATTAGCTTTTGGGGAAGTACAGATAACA TATCTCACTCATGCCTGCATGGACCTCAAGTTGGGAGACAAGCGAATGGTATTTGACCCTTGGTTAATTG GCCCTGCTTTTGCCCGAGGATGGTGGTTGCTACATGAGCCTCCATCTGACTGGTTGGAGAGGCTGTGCAA AGCAGACCTCATTTATATCAGCCACATGCACTCAGACCACCTGAGCTACCCTACCCTGAAGCAGCTTTCC CAGAGACGACCAGACATTCCCATTTATGTTGGCGACACAGAAAGGCCTGTGTTTTGGAACCTGGATCAGA GTGGCGTCGGGTTAACTAACATCAACGTGGTTCCATTTGGAATATGGCAACAGGTAGACAAAAGTCTGCG GTTCATGATCTTGATGGACGGCGTTCATCCTGAGATGGACACATGCATTATCGTGGAGTACAAAGGTCAT AAAATACTCAACACAGTGGACTGCACCAGACCCAATGGGGGAAGGCTTCCTGAGAAAGTTGCTCTAATGA TGAGTGATTTCGCAGGAGGTGCATCAGGCTTTCCAATGACTTTCAGTGGTGGAAAATTTACTGAGGAATG GAAAGCCCAGTTCATTAAGGCTGAAAGAAGAAAGCTTCTGAATTACAAAGCTCAGCTGGTGAAGGACCTG CAGCCCCGAATCTACTGTCCGTTTGCTGGGTACTTTGTGGAGTCTCACCCATCTGACAAGTACATTAAGG AAACAAACACCAAAAATGACCCAAATCAGCTCAACAATCTTATCAGGAAAAACTCTGACGTGGTGACATG GACCCCACGACCTGGCGCTGTCCTCGACCTTGGCAGGATGCTGAAGGACCCAACAGACAGCAAGGGCATT GTGGAGCCTCCAGAGGGGACAAAGATTTACAAGGATTCCTGGGACTTTGGCCCGTACCTGGAGATCTTGA ATTCTGCTGTCAGAGATGAAATCTTCTGTCATTCATCCTGGATTAAAGAGTACTTCACGTGGGCTGGATT TAAGAATTACAACCTGGTGGTCAGGATGATTGAAACAGATGAAGATTTCAGCCCTTTTCCTGGAGGGTAC GACTATCTGGTGGACTTTCTAGATTTATCCTTTCCGAAAGAAAGACCCAGCCGGGAGCATCCTTATGAAG AAATCCATAGCCGGGTGGATGTCATCAGGTACGTGGTGAAGAACGGCCTGCTGTGGGATGATCTGTATAT TGGATTCCAGACCCGATTGCTGCGGGACCCTGATATATACCATCATCTGTTTTGGAATCATTTTCAGATA AAACTCCCTCTAACACCACCCAACTGGAAGTCGTTCCTAATGCACTGTGATTAG
Translation (577 aa): MMDRKQTAETLLTLSPAEVANLKEGINFFRNKTTGKEYILYKEKDHLKACKNLCKHQGGLFMKDIEDLDG RSVKCTKHNWKLDVSTMKYINPPGSFCQDELVIEMDENNGLSLVELNPPNPWDSDPRSPEELAFGEVQIT YLTHACMDLKLGDKRMVFDPWLIGPAFARGWWLLHEPPSDWLERLCKADLIYISHMHSDHLSYPTLKQLS QRRPDIPIYVGDTERPVFWNLDQSGVGLTNINVVPFGIWQQVDKSLRFMILMDGVHPEMDTCIIVEYKGH KILNTVDCTRPNGGRLPEKVALMMSDFAGGASGFPMTFSGGKFTEEWKAQFIKAERRKLLNYKAQLVKDL QPRIYCPFAGYFVESHPSDKYIKETNTKNDPNQLNNLIRKNSDVVTWTPRPGAVLDLGRMLKDPTDSKGI VEPPEGTKIYKDSWDFGPYLEILNSAVRDEIFCHSSWIKEYFTWAGFKNYNLVVRMIETDEDFSPFPGGY DYLVDFLDLSFPKERPSREHPYEEIHSRVDVIRYVVKNGLLWDDLYIGFQTRLLRDPDIYHHLFWNHFQI KLPLTPPNWKSFLMHCD
|