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Report for CCDS26347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26347.1 Public Mus musculus 13 H3c6 23 108 98 CCDS HistoryNCBI Gene:319151Re-query CCDS DB by CCDS ID:26347.1Re-query CCDS DB by GeneID:319151See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105107.1 ENSMUSP00000100739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105107.1Link to Ensembl Protein Viewer:ENSMUSP00000100739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105107Re-query CCDS DB by Protein ID:ENSMUSP00000100739
Original member Current member NCBI NM_178205.3 NP_835512.1 Accepted alive Link to Nucleotide Sequence:NM_178205.3Link to Protein Sequence:NP_835512.1Re-query CCDS DB by Nucleotide ID:NM_178205Re-query CCDS DB by Protein ID:NP_835512Link to BLAST:NP_835512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835512.1 136 P84228 136 100% 0 0

Chromosomal Locations for CCDS 26347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23561955 23562365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCTCGTACTAAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCTCCGCGCAAGCAGCTGGCCACCA
AGGCCGCCCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGCTACCGTCCCGGCACCGT
GGCGCTGCGCGAAATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGC
CTGGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCTCTGC
AGGAGGCGAGCGAGGCCTACCTCGTGGGTCTGTTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCG
TGTCACCATCATGCCCAAGGACATCCAGCTGGCCCGCCGTATCCGCGGCGAGCGGGCTTAA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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