NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26334.1 Public Mus musculus 13 Vmn1r219 23 108 98 CCDS HistoryNCBI Gene:171272Re-query CCDS DB by CCDS ID:26334.1Re-query CCDS DB by GeneID:171272See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076180.1 ENSMUSP00000075537.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076180.1Link to Ensembl Protein Viewer:ENSMUSP00000075537.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000076180Re-query CCDS DB by Protein ID:ENSMUSP00000075537
Original member Current member EBI ENSMUST00000228113.1 ENSMUSP00000154069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228113.1Link to Ensembl Protein Viewer:ENSMUSP00000154069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228113Re-query CCDS DB by Protein ID:ENSMUSP00000154069
Original member Current member EBI ENSMUST00000228666.1 ENSMUSP00000154240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228666.1Link to Ensembl Protein Viewer:ENSMUSP00000154240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228666Re-query CCDS DB by Protein ID:ENSMUSP00000154240
Original member Current member EBI ENSMUST00000227388.1 ENSMUSP00000154415.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227388.1Link to Ensembl Protein Viewer:ENSMUSP00000154415.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227388Re-query CCDS DB by Protein ID:ENSMUSP00000154415
Original member Current member EBI ENSMUST00000226845.1 ENSMUSP00000154796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226845.1Link to Ensembl Protein Viewer:ENSMUSP00000154796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226845Re-query CCDS DB by Protein ID:ENSMUSP00000154796
Original member Current member NCBI NM_134238.1 NP_598999.1 Accepted alive Link to Nucleotide Sequence:NM_134238.1Link to Protein Sequence:NP_598999.1Re-query CCDS DB by Nucleotide ID:NM_134238Re-query CCDS DB by Protein ID:NP_598999Link to BLAST:NP_598999.1

Chromosomal Locations for CCDS 26334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23162643 23163581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGTTTTGCAATTTATTAAGGAAATATTTTTTTTCTTCATGACTATGGTTGGCATTCTGGGGAACATGT
CTGTTTCTGTGCATTATATGTTCAGTTGGTGGGGAAGCCCTGAGAAGAAACCCATACACCTTATTCTCAC
TCACTTGACTTTTACAAACATCATACTTCTGCTTGCAAAAGGATTGCAAAAGACAATAACAGTTTTTAGG
TTGAGAAACTTCCTGGATGACATAGGCTGCAAGATCATTGTTTACCTGGAGAGGGTGGCCCGGGGCCTCT
CCATCTGCACCAGCAGTTTCCTCACTGTGGTCCAGGCCATCATCATCAGTCCCAGAGCATCTGGGTGGAG
CAGACTCAGGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATATTCAATGGTTTA
ATAAGTGTGAACCTAATCCATTCGATTAGAAGTATAGGTATGAATACATCACAGCATAAGAATAGTGACA
ACTATTGTTATATGACACTAGAAAGTCAGGAAATCAAATGGATTGTTCTCCCTCTCATGGTCCTGAGAGA
TGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCACCACCAG
CAAGTCCTCTACTTTCAGAACTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAAAGTG
TCCTCCTTCTGATGCTCTGTTTTGTTTTCTTCTACTGGACAGACTGTGCCTTTTCTCTGTTTCTAAGTCT
CTCTTTAGGGGACTATTTGTTGATGGTAAGTATTCATGAATCTGTGACCCTTGGTTATGCAGTTTCCAGC
CCCCTCCTGCTGATTCACAGGGATGGACTTTTGACTGAATGTTGCCATTCTCAATGGGAGACATTGAGAA
ACTGTCTCTCTCTACTATATTTTCAATAA

Translation (312 aa):
MVLQFIKEIFFFFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTITVFR
LRNFLDDIGCKIIVYLERVARGLSICTSSFLTVVQAIIISPRASGWSRLRPKSAWHILPFFSFFWIFNGL
ISVNLIHSIRSIGMNTSQHKNSDNYCYMTLESQEIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQ
QVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLSLSLGDYLLMVSIHESVTLGYAVSS
PLLLIHRDGLLTECCHSQWETLRNCLSLLYFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH