NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26291.1 Public Mus musculus 13 H4c11 23 108 98 CCDS HistoryNCBI Gene:319159Re-query CCDS DB by CCDS ID:26291.1Re-query CCDS DB by GeneID:319159See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087714.5 ENSMUSP00000085006.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087714.5Link to Ensembl Protein Viewer:ENSMUSP00000085006.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087714Re-query CCDS DB by Protein ID:ENSMUSP00000085006
Original member Current member NCBI NM_178210.2 NP_835582.1 Accepted alive Link to Nucleotide Sequence:NM_178210.2Link to Protein Sequence:NP_835582.1Re-query CCDS DB by Nucleotide ID:NM_178210Re-query CCDS DB by Protein ID:NP_835582Link to BLAST:NP_835582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835582.1 103 P62806 103 100% 0 0

Chromosomal Locations for CCDS 26291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21735096 21735407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGTCTGGCAGAGGTAAGGGCGGGAAAGGGCTCGGTAAAGGTGGCGCTAAGCGCCACCGCAAAGTGCTGC
GCGACAACATCCAGGGCATCACGAAGCCCGCCATCCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCAT
CTCCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCC
GTCACCTACACGGAGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCC
AGGGCCGCACCCTCTACGGGTTCGGCGGCTAA

Translation (103 aa):
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDA
VTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH