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Report for CCDS26233.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
26233.2 |
Public |
Mus musculus |
13 |
Idi1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:319554](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:26233.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:319554](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 26233.2 |
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 56 aa longer. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 26233.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000169314.8 |
ENSMUSP00000132780.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000169314.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000132780.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000169314](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000132780](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_145360.2 |
NP_663335.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_145360.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_663335.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_145360](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_663335](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_663335.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 26233.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (852 nt): ATGTGGCGCGGACGGACACTGGCGCGAGCGATTGGATATGCTGTTAGAGGGCGGGGCCTGGAGGCGGAGC ATGCTGCGGAGAGGATTGAAGTACAGCTCTCCGCACAGCTTCTCAGCACCTGCAGCCGGAATCTCTGTGT TCTAGGTCAGATCAGACATTCTGTCACAATGCCTGAAATAAATACCAGCCATCTTGATGAAAAACAGGTT CAGCTTCTAGCGGAGATGTGTATTCTTATTGATGAAAATGACAATAAAATTGGGGCTGACACCAAGAAAA ACTGTCACCTTAATGAAAACATCGACAAAGGATTATTACATCGAGCTTTTAGTGTCTTCTTGTTTAATAC TGAAAATAAGCTCCTGTTACAGCAGAGATCAGATGCTAAAATTACCTTTCCAGGTTGTTTCACCAATAGT TGCTGTAGTCATCCATTAAGTAACCCAGGCGAGCTGGAAGAGAACAACGCCATTGGTGTGAAGCGAGCAG CAAAGCGGCGCTTGAAAGCCGAGTTGGGAATACCCTTGGAAGAGGTTGATCTAAATGAAATGGATTATCT AACAAGAATTTACTACAAGGCCCAATCTGATGGTATCTGGGGTGAACATGAAGTTGATTACATTCTGTTT CTGAGGAAGAATGTAACCTTGAATCCAGATCCCAACGAGATTAAAAGCTATTGCTATGTATCAAAGGAAG AAGTCAGAGAAATTTTGAAGAAGGCAGCCAGTGGTGAAATTAAGTTAACTCCGTGGTTTAAGATAATTGC AGATACTTTCCTCTTCAAATGGTGGGATAACTTAAACCATTTGAGTCCATTTGTTGACCATGAGAAAATA CATAGATTGTGA
Translation (283 aa): MWRGRTLARAIGYAVRGRGLEAEHAAERIEVQLSAQLLSTCSRNLCVLGQIRHSVTMPEINTSHLDEKQV QLLAEMCILIDENDNKIGADTKKNCHLNENIDKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNS CCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILF LRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGEIKLTPWFKIIADTFLFKWWDNLNHLSPFVDHEKI HRL
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