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Report for CCDS26229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26229.1 Public Mus musculus 13 Klf6 23 108 98 CCDS HistoryNCBI Gene:23849Re-query CCDS DB by CCDS ID:26229.1Re-query CCDS DB by GeneID:23849See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000080.7 ENSMUSP00000000080.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000080.7Link to Ensembl Protein Viewer:ENSMUSP00000000080.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000080Re-query CCDS DB by Protein ID:ENSMUSP00000000080
Original member Current member NCBI NM_011803.2 NP_035933.2 Accepted alive Link to Nucleotide Sequence:NM_011803.2Link to Protein Sequence:NP_035933.2Re-query CCDS DB by Nucleotide ID:NM_011803Re-query CCDS DB by Protein ID:NP_035933Link to BLAST:NP_035933.2

Chromosomal Locations for CCDS 26229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 5861639 5861842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 5864768 5865344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 5866639 5866762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 5867232 5867283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGAAACTTTCACCTGCGCTCCCGGGAACAGTTTCTGCTCGGACTCCTGATCGTTCACCTCCCTGTTTTC
CCGACAGCGAGGACTGTCTTTTCCAACCCGACATGGATGTGCTCCCAATGTGTAGCATCTTCCAGGAACT
ACAGATTGTGCACGAAACGGGCTACTTCTCGGCTCTGCCGTCCCTGGAGGAATATTGGCAACAGACCTGC
CTGGAGTTGGAACGCTATCTTCAGAGTGAGCCCTGCTACGTGTCAGCCTCTGAGATAAAATTTGACAGCC
AGGAAGACCTGTGGACCAAATTCATTCTAGCTCGGGGGGAGAAGAAGGAGGAATCAGAACTGAAGATTTC
TTCTAGTCCCCCAGAGGACTCTCTGATCAGCTCCAGCTTTAATTATAACTTAGAGACCAATAGCCTGAAC
TCTGATGTCAGCAGTGAGTCTTCGGACAGTTCAGAGGAACTTTCACCCACGACCAAATTTACCTCTGATC
CCATTGGTGAAGTCTTAGTCAATTCAGGAAATCTGAGTTCCTCCGTCATTTCCACACCTCCATCTTCTCC
AGAAGTGAACAGGGAATCTTCTCAACTATGGGGCTGTGGGCCAGGAGACCTGCCCTCACCTGGGAAGGTT
CGAAGTGGGACCTCTGGGAAGTCTGGTGACAAGGGTAATGGCGACGCCTCCCCAGATGGCAGAAGACGGG
TACATCGGTGCCACTTTAATGGCTGCAGGAAAGTTTACACGAAAAGCTCCCACTTGAAAGCACATCAGCG
CACTCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGTTGTGAGTGGCGTTTTGCAAGAAGTGAT
GAGTTGACCAGACACTTCCGAAAGCATACCGGTGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGTGTT
TCTCCAGGTCTGACCACCTGGCCCTGCACATGAAGAGGCACCTCTGA

Translation (318 aa):
MKLSPALPGTVSARTPDRSPPCFPDSEDCLFQPDMDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTC
LELERYLQSEPCYVSASEIKFDSQEDLWTKFILARGEKKEESELKISSSPPEDSLISSSFNYNLETNSLN
SDVSSESSDSSEELSPTTKFTSDPIGEVLVNSGNLSSSVISTPPSSPEVNRESSQLWGCGPGDLPSPGKV
RSGTSGKSGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHTGEKPYRCSWEGCEWRFARSD
ELTRHFRKHTGAKPFKCSHCDRCFSRSDHLALHMKRHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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