NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2620.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2620.2 Public Homo sapiens 3 CCDC174 24 110 108 CCDS HistoryNCBI Gene:51244Re-query CCDS DB by CCDS ID:2620.2Re-query CCDS DB by GeneID:51244See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2620.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383794.7 ENSP00000373304.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383794.7Link to Ensembl Protein Viewer:ENSP00000373304.3Re-query CCDS DB by Nucleotide ID:ENST00000383794Re-query CCDS DB by Protein ID:ENSP00000373304
Original member Current member NCBI NM_016474.5 NP_057558.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016474.5Link to Protein Sequence:NP_057558.3Re-query CCDS DB by Nucleotide ID:NM_016474Re-query CCDS DB by Protein ID:NP_057558Link to BLAST:NP_057558.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057558.3 467 Q6PII3 467 100% 0 0

Chromosomal Locations for CCDS 2620.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14651837 14651878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14654426 14654530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14655529 14655629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14658871 14658929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14661530 14661707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14665028 14665123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14666805 14666947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14667424 14667518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14668049 14668181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14669934 14670086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14670896 14671194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGACCGTAGGAAAAAGCCTTTGGACGTCACGGCCTCCTCGTTGGTAGATCTTAAGGCTGAACTCTTCC
GAAAGCAAGAAGAATTCAAACAAGAAAAACTTCTAAAAGATTCTGGAGTTTTTGGAAAACCAAAAACAAC
TAACAAGAAACCAAGTATCTGGAGCAAACAGAATGTAGGCGTTTCAAATCGAGCTGAGAAGGATGCTGAA
CAGAAGATTGAAGAACAGAAGACTTTAGACAAAGCAAGGGAAAAATTGGAAGAAAAAGCCAAATTATATG
AAAAAATGACTAAAGGAGACTTTATAGATGAAGAAGTAGAGGATATGTACCTTGTGGATTTCACACAGAA
GATCATAGACAAGCGCAAAGAAATGGAGGCATCTGGTGCCCATAGAGATTCTCAAAAGGCAGGAGAAAGG
GACGACGATGAGGAAAACCTTCCTGAGGGAGAGATCCCTCCTCCCCAAGACCCCAGTGAAGAATGGGTGG
ATTACGTGGACTCTTTGGGGCGTTCCCGGCGCTGTATGAGAAAGGATTTGCCAGATCTGCTGGAGATGGA
TAAAAATCTTCAGGGGAGACTTTTTATTAGTCCTGCTAATGAAAAAACCCTATTATCTGAAGATATGAGA
AAAGAACTTCAGCGCCAGCAATGGGAGGAAGAAGAAAGAGAGGCCCTGAAGAGGCCCATGGGGCCCGTAC
ATTATGAAGACATTCGGGAAAATGAGGCCCGGCAACTTGGTGTTGGGTATTTTGCCTTTGCCCGAGACAA
AGAGTTGAGAAACAAGCAGATGAAAACCTTAGAGATGCTGCGTGAACAGACAACAGATCAGAGAACAAAA
CGAGAAAACATAAAGGAAAAGCGAAAGGCTATCTTAGAGGCAAGACTTGCCAAACTTCGACAAAAAAAGA
TGAAAAAATCAAAAGAAGGTGGAACAGAAGAAGAAAATAGAGATGGAGATGTTATTGGGCCTTTGCCACC
GGAGCCAGAGGCTGTGCCAACCCCACGTCCTGCTGCCCAGAGTAGCAAAGTAGAAGTCATTGTCCAGGAG
AGGAAGGACACCAAGCCTGGAGTGCCACACATCCGGGAGTGGGACCGCGGAAAAGAATTTTCCTTTGGAT
ACTGGTCGAAGAGGCAGTCAGATCTCCGGGCTGAGAGAGATCCTGAGTTTGCCCCGCCGTCAGATTACTT
TGTGGGTCAGAAGAGAACTGGTTTTTCCAGCAGCCAGGCATGGAGCAGACCTGGGCCAGCACAGAGTGAC
CCAGGGCAGTGCCCTGACCAGAGCCACGGACCTAGCCCTGAACATACGTCACCCACTCCTGCCCCCGACA
ACCCACCACAAGCCCCCACAGTTACTTTCAAAACTCTGGATGACATGATTTCCTATTACAAACAAGTGAC
ATGA

Translation (467 aa):
MDRRKKPLDVTASSLVDLKAELFRKQEEFKQEKLLKDSGVFGKPKTTNKKPSIWSKQNVGVSNRAEKDAE
QKIEEQKTLDKAREKLEEKAKLYEKMTKGDFIDEEVEDMYLVDFTQKIIDKRKEMEASGAHRDSQKAGER
DDDEENLPEGEIPPPQDPSEEWVDYVDSLGRSRRCMRKDLPDLLEMDKNLQGRLFISPANEKTLLSEDMR
KELQRQQWEEEEREALKRPMGPVHYEDIRENEARQLGVGYFAFARDKELRNKQMKTLEMLREQTTDQRTK
RENIKEKRKAILEARLAKLRQKKMKKSKEGGTEEENRDGDVIGPLPPEPEAVPTPRPAAQSSKVEVIVQE
RKDTKPGVPHIREWDRGKEFSFGYWSKRQSDLRAERDPEFAPPSDYFVGQKRTGFSSSQAWSRPGPAQSD
PGQCPDQSHGPSPEHTSPTPAPDNPPQAPTVTFKTLDDMISYYKQVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH