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Report for CCDS2610.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2610.3 Public Homo sapiens 3 PPARG 24 110 108 CCDS HistoryNCBI Gene:5468Re-query CCDS DB by CCDS ID:2610.3Re-query CCDS DB by GeneID:5468See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2610.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309576.11 ENSP00000312472.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309576.11Link to Ensembl Protein Viewer:ENSP00000312472.7Re-query CCDS DB by Nucleotide ID:ENST00000309576Re-query CCDS DB by Protein ID:ENSP00000312472
Original member Current member EBI ENST00000397010.7 ENSP00000380205.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397010.7Link to Ensembl Protein Viewer:ENSP00000380205.3Re-query CCDS DB by Nucleotide ID:ENST00000397010Re-query CCDS DB by Protein ID:ENSP00000380205
Original member Current member EBI ENST00000397015.7 ENSP00000380210.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397015.7Link to Ensembl Protein Viewer:ENSP00000380210.3Re-query CCDS DB by Nucleotide ID:ENST00000397015Re-query CCDS DB by Protein ID:ENSP00000380210
Original member Current member EBI ENST00000397026.7 ENSP00000380221.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397026.7Link to Ensembl Protein Viewer:ENSP00000380221.3Re-query CCDS DB by Nucleotide ID:ENST00000397026Re-query CCDS DB by Protein ID:ENSP00000380221
Original member Current member EBI ENST00000644622.2 ENSP00000494873.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000644622.2Link to Ensembl Protein Viewer:ENSP00000494873.2Re-query CCDS DB by Nucleotide ID:ENST00000644622Re-query CCDS DB by Protein ID:ENSP00000494873
Original member Current member EBI ENST00000643888.2 ENSP00000494934.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643888.2Link to Ensembl Protein Viewer:ENSP00000494934.2Re-query CCDS DB by Nucleotide ID:ENST00000643888Re-query CCDS DB by Protein ID:ENSP00000494934
Original member Current member EBI ENST00000643197.2 ENSP00000495840.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643197.2Link to Ensembl Protein Viewer:ENSP00000495840.2Re-query CCDS DB by Nucleotide ID:ENST00000643197Re-query CCDS DB by Protein ID:ENSP00000495840
Original member Current member EBI ENST00000651735.1 ENSP00000498313.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651735.1Link to Ensembl Protein Viewer:ENSP00000498313.1Re-query CCDS DB by Nucleotide ID:ENST00000651735Re-query CCDS DB by Protein ID:ENSP00000498313
Original member Current member EBI ENST00000682446.1 ENSP00000506813.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682446.1Link to Ensembl Protein Viewer:ENSP00000506813.1Re-query CCDS DB by Nucleotide ID:ENST00000682446Re-query CCDS DB by Protein ID:ENSP00000506813
Original member Current member EBI ENST00000683586.1 ENSP00000507893.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683586.1Link to Ensembl Protein Viewer:ENSP00000507893.1Re-query CCDS DB by Nucleotide ID:ENST00000683586Re-query CCDS DB by Protein ID:ENSP00000507893
Original member Current member EBI ENST00000681982.1 ENSP00000508065.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681982.1Link to Ensembl Protein Viewer:ENSP00000508065.1Re-query CCDS DB by Nucleotide ID:ENST00000681982Re-query CCDS DB by Protein ID:ENSP00000508065
Original member Current member NCBI NM_001354666.3 NP_001341595.2 Accepted alive Link to Nucleotide Sequence:NM_001354666.3Link to Protein Sequence:NP_001341595.2Re-query CCDS DB by Nucleotide ID:NM_001354666Re-query CCDS DB by Protein ID:NP_001341595Link to BLAST:NP_001341595.2
Original member Current member NCBI NM_001354667.3 NP_001341596.2 Accepted alive Link to Nucleotide Sequence:NM_001354667.3Link to Protein Sequence:NP_001341596.2Re-query CCDS DB by Nucleotide ID:NM_001354667Re-query CCDS DB by Protein ID:NP_001341596Link to BLAST:NP_001341596.2
Original member Current member NCBI NM_001374263.2 NP_001361192.2 Accepted alive Link to Nucleotide Sequence:NM_001374263.2Link to Protein Sequence:NP_001361192.2Re-query CCDS DB by Nucleotide ID:NM_001374263Re-query CCDS DB by Protein ID:NP_001361192Link to BLAST:NP_001361192.2
Original member Current member NCBI NM_001374264.2 NP_001361193.2 Accepted alive Link to Nucleotide Sequence:NM_001374264.2Link to Protein Sequence:NP_001361193.2Re-query CCDS DB by Nucleotide ID:NM_001374264Re-query CCDS DB by Protein ID:NP_001361193Link to BLAST:NP_001361193.2
Original member Current member NCBI NM_005037.7 NP_005028.5 Accepted alive Link to Nucleotide Sequence:NM_005037.7Link to Protein Sequence:NP_005028.5Re-query CCDS DB by Nucleotide ID:NM_005037Re-query CCDS DB by Protein ID:NP_005028Link to BLAST:NP_005028.5
Original member Current member NCBI NM_138711.6 NP_619725.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138711.6Link to Protein Sequence:NP_619725.3Re-query CCDS DB by Nucleotide ID:NM_138711Re-query CCDS DB by Protein ID:NP_619725Link to BLAST:NP_619725.3
Original member Current member NCBI NM_138712.5 NP_619726.3 Accepted alive Link to Nucleotide Sequence:NM_138712.5Link to Protein Sequence:NP_619726.3Re-query CCDS DB by Nucleotide ID:NM_138712Re-query CCDS DB by Protein ID:NP_619726Link to BLAST:NP_619726.3

Chromosomal Locations for CCDS 2610.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12379712 12379931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12381322 12381491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12392614 12392752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12405882 12406081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12416704 12417154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12433898 12434145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCGTGGATCTCTCCGTAATGG
AAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTGTTGACTTCTCCAGCATTTCTACTCCACA
TTACGAAGACATTCCATTCACAAGAACAGATCCAGTGGTTGCAGATTACAAGTATGACCTGAAACTTCAA
GAGTACCAAAGTGCAATCAAAGTGGAGCCTGCATCTCCACCTTATTATTCTGAGAAGACTCAGCTCTACA
ATAAGCCTCATGAAGAGCCTTCCAACTCCCTCATGGCAATTGAATGTCGTGTCTGTGGAGATAAAGCTTC
TGGATTTCACTATGGAGTTCATGCTTGTGAAGGATGCAAGGGTTTCTTCCGGAGAACAATCAGATTGAAG
CTTATCTATGACAGATGTGATCTTAACTGTCGGATCCACAAAAAAAGTAGAAATAAATGTCAGTACTGTC
GGTTTCAGAAATGCCTTGCAGTGGGGATGTCTCATAATGCCATCAGGTTTGGGCGGATGCCACAGGCCGA
GAAGGAGAAGCTGTTGGCGGAGATCTCCAGTGATATCGACCAGCTGAATCCAGAGTCCGCTGACCTCCGG
GCCCTGGCAAAACATTTGTATGACTCATACATAAAGTCCTTCCCGCTGACCAAAGCAAAGGCGAGGGCGA
TCTTGACAGGAAAGACAACAGACAAATCACCATTCGTTATCTATGACATGAATTCCTTAATGATGGGAGA
AGATAAAATCAAGTTCAAACACATCACCCCCCTGCAGGAGCAGAGCAAAGAGGTGGCCATCCGCATCTTT
CAGGGCTGCCAGTTTCGCTCCGTGGAGGCTGTGCAGGAGATCACAGAGTATGCCAAAAGCATTCCTGGTT
TTGTAAATCTTGACTTGAACGACCAAGTAACTCTCCTCAAATATGGAGTCCACGAGATCATTTACACAAT
GCTGGCCTCCTTGATGAATAAAGATGGGGTTCTCATATCCGAGGGCCAAGGCTTCATGACAAGGGAGTTT
CTAAAGAGCCTGCGAAAGCCTTTTGGTGACTTTATGGAGCCCAAGTTTGAGTTTGCTGTGAAGTTCAATG
CACTGGAATTAGATGACAGCGACTTGGCAATATTTATTGCTGTCATTATTCTCAGTGGAGACCGCCCAGG
TTTGCTGAATGTGAAGCCCATTGAAGACATTCAAGACAACCTGCTACAAGCCCTGGAGCTCCAGCTGAAG
CTGAACCACCCTGAGTCCTCACAGCTGTTTGCCAAGCTGCTCCAGAAAATGACAGACCTCAGACAGATTG
TCACGGAACACGTGCAGCTACTGCAGGTGATCAAGAAGACGGAGACAGACATGAGTCTTCACCCGCTCCT
GCAGGAGATCTACAAGGACTTGTACTAG

Translation (475 aa):
MVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDFSSISTPHYEDIPFTRTDPVVADYKYDLKLQ
EYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK
LIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLR
ALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIF
QGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREF
LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLK
LNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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