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Report for CCDS26097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26097.1 Public Mus musculus 12 Spata7 23 108 98 CCDS HistoryNCBI Gene:104871Re-query CCDS DB by CCDS ID:26097.1Re-query CCDS DB by GeneID:104871See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048402.11 ENSMUSP00000045827.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048402.11Link to Ensembl Protein Viewer:ENSMUSP00000045827.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048402Re-query CCDS DB by Protein ID:ENSMUSP00000045827
Original member Current member NCBI NM_178914.4 NP_849245.2 Accepted alive Link to Nucleotide Sequence:NM_178914.4Link to Protein Sequence:NP_849245.2Re-query CCDS DB by Nucleotide ID:NM_178914Re-query CCDS DB by Protein ID:NP_849245Link to BLAST:NP_849245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849245.2 582 Q80VP2 582 100% 0 0

Chromosomal Locations for CCDS 26097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98628316 98628334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98631963 98632037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98634224 98634319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98637566 98637613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98648349 98648482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98658213 98658646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98659550 98659616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98661972 98662087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98663165 98663218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98664228 98664305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98668832 98668889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98669102 98669671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGATGGCAGCCGGAGAGTCAGAGCAACCTCTGTCCTCCCCAGATACAGCCCTCCATGCTTGTTTACAG
GACACCTGAGCACCAAGAGCAACGCTTTTTGCACTGATTCCTCTTCTCTCAGACTAAGCACCCTGCAGCT
GGTCAAGAACCACATGGCTATTCACTATAATAAAATCCTTTCAGCCAAAGCCGCAGTGGACTGCTCAATT
CCAGTAAGTGTGAATACTAGCATCAAATATGCTGACCAACAACGAAGAGAAAAACTGAGGAAGGAGTTGG
CACGGTGTGAAAAGGAGTTTAAATTAAGTAAATCTGCTATGCAGACCAATTCTAAGATGAATTCCAAGTT
CTTTGTAAATTCTCTACAGAAGCCCTCAGGGGAACCACAAGACCAGGATGTGTTCATAGAAGAAATGACA
AGATACCCATCATTTTCAAAGTCACTCATCCCTTCTTCCGAGGGACTGCATCTAAGTCTGCCTGAATCAA
GTAAGATGCTCATGAGTGGCACCCAGAAGCATGCCAGCACCTCTCCATCCAGACACTCAGGCTGTGGGCA
TGGCTGCGACAGGCGGCCTCGGAGTGCCCACCAGTTCCAGGTAGCCCTCGCCAAGACCCCAAGTGGAGAT
CTGTTGGAAAAGCACTCTGACCTCTTCTCTAACAAGCAGTCGCCATTCACTCCACGAACTTTAAAAACAG
AAGCAAAGTCCTTCCTGTCACAGTACCGCTACTACACACCTGCCAAAAGAAGAAAGGATTTTTCAGATCA
GCGGATGGAAGCTGAAACCCAAACTGAATTAAGCAGCTTTAACTCTGAGCTTGGGACAGCTGAGAAAACG
AGCTCAAAGGACTCAGAAGTGAACATAAACCAGGTACCTAATTACACGAGAAATGGTGCTGAAGACAAAA
TAGCTCCTTTACCCTCACAAGGACAAAACTTAGCATGGGACAGTATTCAAGATGGGATTCTGCAGCAGTC
CTCAGAAAGGGCATCCTGTAAGCTCTCCACAGAGTTTTCTCCAGACAGTAAAATCTACTCTGATGAAGAA
GAGCTGCTGTACCTGAGTTTCATGGAAAATGTGACGGATGAAATCTTGAAACTTGGTTTATTTTCTAACA
GGTTTCTAGAGCGACTGTTTGAGCGACATATAAAGAAAAATAAACATCATTTGGAGGAGGGAAAGATGCG
CTACCTGCTGCATGGGCTGAAGGTTGACTTAGGCTGCATATCTGAGGAAGACCCAGCAAAGCAAAAACAT
TTCAGAATGTTGAATCAACTTCATTTTCAAAAGGCTCTGATTTCAAGAGAAAATGAGTTTGTAAGTGATG
AAGAAACAGTGAGTCACCACGAGCGCCAGCAGTACCAGGAGGCCCTGGACATGCTGTCGGCTGTGCCGAA
GGACGAAAACAAGATGTTCTCTTTACCGGGCGAATTTTTAATACCCGCCCATAAAGTCAAGCATTCAGAG
GGTGTTATAATTCAACAGGTCAATGACGAAACAGATAATGAAGCCTCACCCTGGAATGAAAACAATCCAA
GTGTTTCTGATAGTGTAATAGACCAGGAAACCTCTGTGGATGTCATTGAAGGTGACAGTGACTTTGAAAG
GGCTGAGACTTCCAGGGAACTCTGTTGTCTGAGCACATCACTGTCCCCATCTGGTCCATTCCCCAGCATC
AATGGTGGCAGTAATCATGGTAAGGAATTATCGACTCTACGAATCATGGGAATGAGCATTGAAGACTGA

Translation (582 aa):
MDGSRRVRATSVLPRYSPPCLFTGHLSTKSNAFCTDSSSLRLSTLQLVKNHMAIHYNKILSAKAAVDCSI
PVSVNTSIKYADQQRREKLRKELARCEKEFKLSKSAMQTNSKMNSKFFVNSLQKPSGEPQDQDVFIEEMT
RYPSFSKSLIPSSEGLHLSLPESSKMLMSGTQKHASTSPSRHSGCGHGCDRRPRSAHQFQVALAKTPSGD
LLEKHSDLFSNKQSPFTPRTLKTEAKSFLSQYRYYTPAKRRKDFSDQRMEAETQTELSSFNSELGTAEKT
SSKDSEVNINQVPNYTRNGAEDKIAPLPSQGQNLAWDSIQDGILQQSSERASCKLSTEFSPDSKIYSDEE
ELLYLSFMENVTDEILKLGLFSNRFLERLFERHIKKNKHHLEEGKMRYLLHGLKVDLGCISEEDPAKQKH
FRMLNQLHFQKALISRENEFVSDEETVSHHERQQYQEALDMLSAVPKDENKMFSLPGEFLIPAHKVKHSE
GVIIQQVNDETDNEASPWNENNPSVSDSVIDQETSVDVIEGDSDFERAETSRELCCLSTSLSPSGPFPSI
NGGSNHGKELSTLRIMGMSIED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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