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Report for CCDS26050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26050.1 Public Mus musculus 12 Npc2 23 108 98 CCDS HistoryNCBI Gene:67963Re-query CCDS DB by CCDS ID:26050.1Re-query CCDS DB by GeneID:67963See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021668.9 ENSMUSP00000021668.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021668.9Link to Ensembl Protein Viewer:ENSMUSP00000021668.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021668Re-query CCDS DB by Protein ID:ENSMUSP00000021668
Original member Current member NCBI NM_023409.4 NP_075898.1 Accepted alive Link to Nucleotide Sequence:NM_023409.4Link to Protein Sequence:NP_075898.1Re-query CCDS DB by Nucleotide ID:NM_023409Re-query CCDS DB by Protein ID:NP_075898Link to BLAST:NP_075898.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075898.1 149 Q9Z0J0 149 100% 0 0

Chromosomal Locations for CCDS 26050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84757126 84757212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84760720 84760892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84765277 84765384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84772786 84772867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGCGTTTTCTGGCCGCCACGATCCTGCTGCTGGCGCTGGTCGCTGCCAGCCAGGCGGAGCCCCTGCACT
TCAAGGACTGCGGCTCTAAGGTGGGAGTTATAAAGGAGGTGAATGTGAGCCCATGTCCCACCGATCCCTG
TCAGCTGCACAAAGGCCAGTCCTACAGTGTCAACATCACCTTTACCAGCGGCACTCAGTCCCAGAACAGC
ACGGCCTTGGTCCACGGCATCCTGGAAGGGATCCGGGTCCCCTTCCCTATTCCTGAGCCTGACGGTTGTA
AGAGTGGAATCAACTGCCCCATCCAGAAAGACAAGGTCTACAGCTACCTGAATAAGCTTCCGGTGAAGAA
TGAATACCCCTCTATAAAACTGGTGGTGGAATGGAAACTTGAAGATGACAAAAAGAATAATCTCTTCTGC
TGGGAGATCCCAGTTCAGATCACAAGCTAG

Translation (149 aa):
MRFLAATILLLALVAASQAEPLHFKDCGSKVGVIKEVNVSPCPTDPCQLHKGQSYSVNITFTSGTQSQNS
TALVHGILEGIRVPFPIPEPDGCKSGINCPIQKDKVYSYLNKLPVKNEYPSIKLVVEWKLEDDKKNNLFC
WEIPVQITS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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