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Report for CCDS25991.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25991.2 Public Mus musculus 12 Zbtb25 23 108 98 CCDS HistoryNCBI Gene:109929Re-query CCDS DB by CCDS ID:25991.2Re-query CCDS DB by GeneID:109929See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 25991.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. The use of an alternative upstream start codon would result in a protein that 113 X aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25991.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167011.7 ENSMUSP00000128471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167011.7Link to Ensembl Protein Viewer:ENSMUSP00000128471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167011Re-query CCDS DB by Protein ID:ENSMUSP00000128471
Original member Current member EBI ENSMUST00000176278.7 ENSMUSP00000134748.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176278.7Link to Ensembl Protein Viewer:ENSMUSP00000134748.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176278Re-query CCDS DB by Protein ID:ENSMUSP00000134748
Original member Current member EBI ENSMUST00000176102.7 ENSMUSP00000135853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176102.7Link to Ensembl Protein Viewer:ENSMUSP00000135853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176102Re-query CCDS DB by Protein ID:ENSMUSP00000135853
Original member Current member NCBI NM_001172104.1 NP_001165575.1 Accepted alive Link to Nucleotide Sequence:NM_001172104.1Link to Protein Sequence:NP_001165575.1Re-query CCDS DB by Nucleotide ID:NM_001172104Re-query CCDS DB by Protein ID:NP_001165575Link to BLAST:NP_001165575.1
Original member Current member NCBI NM_028356.2 NP_082632.2 Accepted alive Link to Nucleotide Sequence:NM_028356.2Link to Protein Sequence:NP_082632.2Re-query CCDS DB by Nucleotide ID:NM_028356Re-query CCDS DB by Protein ID:NP_082632Link to BLAST:NP_082632.2

Chromosomal Locations for CCDS 25991.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76349127 76350273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76355889 76356061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGATACTGCTAGCCATAGCCTTGTGCTTCTGCAGCAGCTGAACATGCAGCGAGAATTCGGCTTTCTGT
GTGACTGCACAGTTGCTATTGGGGATGTTTACTTCAAAGCCCACAGAGCAGTGCTTGCTGCCTTTTCTAA
CTACTTCAAGATGATTTTTATTCACCAAACAAGTGAATGCATAAAAATACAACCAGCTGACATCCAGCCC
GATATATTCAGCTACTTGTTGCATATTATGTACACAGGAAAAGGGCCAAAACAGATTGTGGATCATAGTC
GTTTGGAGGAAGGGATCCGATTTCTTCACGCTGACTACCTTTCTCACATTGCAACTGAAATGAATCAAGT
GTTCTCACCAGAGACTGTGCAGACATCTAATTTGTATGGTATTCAGATTTCAACAACCCAGAAAACAGCT
GTCAAACAAGGGCTGGAGATCAAAGAAACTCCTCCCAGTAGCAGTGGAAACAGAGCTGCTGTCCCAGGTG
ACCACCCCCAGCTGCAGCTCTCTCTGGCAATTGGGCTAGATGATGGCAGCGGTGCGGAGCAGCAGAGGAC
CCATCCTGCTGCCCAGGCCGTGGAGGAGCACCAGAAGCCCCCAGTGTCCATCAAGCAGGAGAGATGTGAT
CCAGAGTCTGTGATCTCCCAAAGCCACTCCTCATCCTCATCAGAGGTGACTGGCCCCTCTTTTACAGAAA
ACAGTATCAAAGTCCACTTATGCCATTACTGTGGGGAGCGCTTTGAATCCCGAAGTAACCTGAGACAACA
CCTCCATACCCACGTGTCCAGATCTCTCCCGTTCGGTGTCCCTGCTTCCATTTTGGAAAGTAATGACCTT
GGTGAAGTGCATCCACTTAGTGACAGCAGTGAGGCTCTTGAATGCCGGAGGCTCAGCTCCTTCATTGTCA
AGGAGAATGAGCAGCAGCAGCCATCACCTGAGCACTCGAGCCGAGGCACCTCAGAGCCTTTGCAGATTAG
TCAAGTATCTTTGATCTCCAAAGACACAGAGCCAGTAGAATTAAACTGTAATTTTTCTTTTTCAAGGAAA
AGAAAAATCAGTTGTACCATCTGTGGTCATAAATTTCTTCGAAAGAGCCAGTTACTGGAACACATGTATA
CACACAAAGGTAAATCCTACAGATATAACCGTTGCCAAAGGTTTGGAAACTCATTGGCCCAGAGGTTTCA
GCAGTATTGTGACAGCTGGCCCGATGTCCCCTTAAAAAGCTCTCGCTTGTCACAAGAACATTTAGACTTG
CCTTGTGCCTTAGAGTCAGAGCTCACACAAGCGGGTGTGGACACCATCCTCGTTGAGTAG

Translation (439 aa):
MDTASHSLVLLQQLNMQREFGFLCDCTVAIGDVYFKAHRAVLAAFSNYFKMIFIHQTSECIKIQPADIQP
DIFSYLLHIMYTGKGPKQIVDHSRLEEGIRFLHADYLSHIATEMNQVFSPETVQTSNLYGIQISTTQKTA
VKQGLEIKETPPSSSGNRAAVPGDHPQLQLSLAIGLDDGSGAEQQRTHPAAQAVEEHQKPPVSIKQERCD
PESVISQSHSSSSSEVTGPSFTENSIKVHLCHYCGERFESRSNLRQHLHTHVSRSLPFGVPASILESNDL
GEVHPLSDSSEALECRRLSSFIVKENEQQQPSPEHSSRGTSEPLQISQVSLISKDTEPVELNCNFSFSRK
RKISCTICGHKFLRKSQLLEHMYTHKGKSYRYNRCQRFGNSLAQRFQQYCDSWPDVPLKSSRLSQEHLDL
PCALESELTQAGVDTILVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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