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Report for CCDS25989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25989.1 Public Mus musculus 12 Tex21 23 108 98 CCDS HistoryNCBI Gene:80384Re-query CCDS DB by CCDS ID:25989.1Re-query CCDS DB by GeneID:80384See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021453.5 ENSMUSP00000021453.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021453.5Link to Ensembl Protein Viewer:ENSMUSP00000021453.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021453Re-query CCDS DB by Protein ID:ENSMUSP00000021453
Original member Current member NCBI NM_019784.5 NP_062758.3 Accepted alive Link to Nucleotide Sequence:NM_019784.5Link to Protein Sequence:NP_062758.3Re-query CCDS DB by Nucleotide ID:NM_019784Re-query CCDS DB by Protein ID:NP_062758Link to BLAST:NP_062758.3

Chromosomal Locations for CCDS 25989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76198793 76198951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76204092 76204310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76206788 76206994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76212375 76212557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76214413 76214718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76216963 76217092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76221483 76221739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76239457 76239585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76245008 76245145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGTCAAGGCCACTCCAGCCTGTAAGTCACTCGGACCCAGGGAGGCTTGCCAATAGCCAAACCAAAGAGG
CCTGTGAGGCTAAGCCACCAGAAGCCAGGCACCTATCACATCTATCGGCTCGGGAAAATGTCCCAGTGGC
TTGTTTTGATCCACCTCTTGAAATGGATCCTACCGGGAACCCAATCATACACAACAAAAAGGCAGCCGAC
CCAGTCCATCCTGACCTTGCCAGCATGTTGGTGAAAAACAAGACTCTTTTAGCTGAGCTGAGAAATCTTC
AAAGCAAGCTCTATGTGAAAGAAACGTCTTTGCAAGAGGTGAAGGCTGAGTTAGAGAGTTACAAAGAAAG
GAATGCCCAGCAGGAGCTACAGATAATATCCCTGAGAGATGACATCAAGAGCCTTCAGGACCTTATTGAT
TCTCTAATGAAGATGAAGATTTTGAAAAACACAAATTCTCAGAATTTTGGAAGACACAACTGGGATCTAA
CTGAGAGAGTTCTAGATCTAGAGAACCGTTTAAGGGAACATCTGGTGGGAAGAGAGGAGATTAAGGCGGA
GCTTCTGGAGAAGAGGCGGTCCTGCCCCAGCAGCTTCTCGCCCTATATGAATCTGAAAGGACCGGAAGAT
TCCTTGGATATTTTCCCAGTGAAGGACAATGATGAAGTCTACAATTTGAAGAGAGGCAGTGTTGTTTACT
CTGAGGGACCAATTGATGGGCAAACTACTGGTGATAAATGTCAGCAAGATTTGATCCACCAAGAAAAGCT
AACGTCTGAGTTGGACAGAGCTCCGTTTTCCTGCGGCTGGGAAACCACACCTGAGCAATCCCATCACCAG
GATTTCCTCGGTCAGTTGGCCACTCTCCTGAGTGACAGCATCGGCCCTATACTAGCCACAGAGGAAGCGG
TGAAAGAGAGGATCCAGGAAATGGGTGCAAATGAACAGTCGTGGAAATGCAAGGCTGAAGCCCTGCAGCA
GGAAATCCAGACGCTCACCAAGAGACTTGAGCAGCTCTACCGCCTTTATGAAGAAGCCCAGACTGAAGAA
AATTACACGGAACAGGAAAGACCCTTGGGACCCCTGGAAGGAAAGGTTGCTGTCAGCTGCTCTCTGAGGA
ACTTAGATGTGGGCAGGAAGAAAGAAAACTCCAGGACCCGGACTGCCCACATAGATAAACACAGCAAGTT
CAAAAAGTTAGAGATGTTATTGGATATTGAGCAGAATTCCAAGATGGCTGCAGCCCCAAGGATGGAGGAG
AAAATCCAGAGACTTCAGAAGCAGCTTAGTGATTTGAAATTGTCAAACAAAAACATGAAGACTCAACTAA
CGAGAATAAATGTCCTTAAAGACAAAACAATTGAGAGGCTCAGGCAATCTGTAACAAAAGTTGAAACCTT
GAAAGAGAAGACAGCAGCCAAAACAGACAACTTGAAAACCCCATCAGATCCTGCGGAGCAGGGAGCAAGA
CCAGAAAAGGAGAGGGCCCACCAGACGCCAGCCCAGAGCCTTCCAGACCCTTCCACAGTCAGGGCTGTGC
TGAAAGGGCTCTCAGGACGAGAGCAAGAGCTTGCTGACTTCCGGGAAGCCATCATGAAGATGCTGGGATT
TAACATGAAAACAGCAGACAAGGATGTCATTAATCGGCTGAAGCTTGTCGTCCAAATTTATGAAATTTCT
AAAAGATCAAAGATGGCTTCTCACTGTGAGCCTGGTCAGGCCAAGTGA

Translation (575 aa):
MSRPLQPVSHSDPGRLANSQTKEACEAKPPEARHLSHLSARENVPVACFDPPLEMDPTGNPIIHNKKAAD
PVHPDLASMLVKNKTLLAELRNLQSKLYVKETSLQEVKAELESYKERNAQQELQIISLRDDIKSLQDLID
SLMKMKILKNTNSQNFGRHNWDLTERVLDLENRLREHLVGREEIKAELLEKRRSCPSSFSPYMNLKGPED
SLDIFPVKDNDEVYNLKRGSVVYSEGPIDGQTTGDKCQQDLIHQEKLTSELDRAPFSCGWETTPEQSHHQ
DFLGQLATLLSDSIGPILATEEAVKERIQEMGANEQSWKCKAEALQQEIQTLTKRLEQLYRLYEEAQTEE
NYTEQERPLGPLEGKVAVSCSLRNLDVGRKKENSRTRTAHIDKHSKFKKLEMLLDIEQNSKMAAAPRMEE
KIQRLQKQLSDLKLSNKNMKTQLTRINVLKDKTIERLRQSVTKVETLKEKTAAKTDNLKTPSDPAEQGAR
PEKERAHQTPAQSLPDPSTVRAVLKGLSGREQELADFREAIMKMLGFNMKTADKDVINRLKLVVQIYEIS
KRSKMASHCEPGQAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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