NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25981.1 Public Mus musculus 12 Rhoj 23 108 98 CCDS HistoryNCBI Gene:80837Re-query CCDS DB by CCDS ID:25981.1Re-query CCDS DB by GeneID:80837See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055390.5 ENSMUSP00000059498.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055390.5Link to Ensembl Protein Viewer:ENSMUSP00000059498.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055390Re-query CCDS DB by Protein ID:ENSMUSP00000059498
Original member Current member NCBI NM_023275.2 NP_075764.1 Accepted alive Link to Nucleotide Sequence:NM_023275.2Link to Protein Sequence:NP_075764.1Re-query CCDS DB by Nucleotide ID:NM_023275Re-query CCDS DB by Protein ID:NP_075764Link to BLAST:NP_075764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075764.1 214 Q9ER71-1 214 100% 0 0

Chromosomal Locations for CCDS 25981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 75308824 75309001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75375348 75375406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75391679 75391843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75393969 75394064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 75400107 75400253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAGCTGCAGAGAGAGGACCGACAGCAGCTGCGGCTGCAATGGACATGAGGAGAACAGGATCCTGAAGT
GCGTGGTGGTCGGGGACGGCGCGGTGGGGAAGACCTGCTTGCTGATGAGCTACGCCAACGACGCCTTCCC
AGAGGAATACGTGCCCACTGTGTTTGACCACTACGCAGTTACCGTGACGGTGGGAGGCAAGCAGCACTTG
CTTGGACTATACGACACTGCAGGACAGGAGGATTACAACCAGCTGCGGCCACTCTCTTACCCCAACACAG
ATGTGTTTCTCATCTGCTTCTCTGTCGTAAACCCAGCCTCTTACCACAACGTTCAGGAGGAGTGGGTCCC
GGAACTGAAGGACTGCATGCCTCATGTGCCTTATGTGCTCATCGGAACCCAGATTGATCTCCGAGATGAC
CCCAAAACCTTGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAGCACGGCGTGAAGCTGG
CGAAAGCGATTGGAGCGCAGTGCTACTTGGAATGTTCTGCCCTGACCCAGAAGGGTCTCAAAGCAGTTTT
TGATGAAGCCATCCTCACCATTTTCCACCCCAAGAAAAAAAAGAAAGGCTGCTTAGGGTGTCACGGCTGC
TGTGCAATTATCTGA

Translation (214 aa):
MSCRERTDSSCGCNGHEENRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHL
LGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDD
PKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHPKKKKKGCLGCHGC
CAII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH