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Report for CCDS25901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25901.1 Public Mus musculus 12 Coch 23 108 98 CCDS HistoryNCBI Gene:12810Re-query CCDS DB by CCDS ID:25901.1Re-query CCDS DB by GeneID:12810See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085412.6 ENSMUSP00000082533.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085412.6Link to Ensembl Protein Viewer:ENSMUSP00000082533.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085412Re-query CCDS DB by Protein ID:ENSMUSP00000082533
Original member Current member EBI ENSMUST00000164782.9 ENSMUSP00000128127.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164782.9Link to Ensembl Protein Viewer:ENSMUSP00000128127.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164782Re-query CCDS DB by Protein ID:ENSMUSP00000128127
Original member NCBI NM_001198835.1 NP_001185764.1 Updated not alive Link to Nucleotide Sequence:NM_001198835.1Link to Protein Sequence:NP_001185764.1Re-query CCDS DB by Nucleotide ID:NM_001198835Re-query CCDS DB by Protein ID:NP_001185764
Current member NCBI NM_001198835.2 NP_001185764.1 Accepted alive Link to Nucleotide Sequence:NM_001198835.2Link to Protein Sequence:NP_001185764.1Re-query CCDS DB by Nucleotide ID:NM_001198835Re-query CCDS DB by Protein ID:NP_001185764Link to BLAST:NP_001185764.1
Original member NCBI NM_007728.5 NP_031754.1 Updated not alive Link to Nucleotide Sequence:NM_007728.5Link to Protein Sequence:NP_031754.1Re-query CCDS DB by Nucleotide ID:NM_007728Re-query CCDS DB by Protein ID:NP_031754
Current member NCBI NM_007728.6 NP_031754.1 Accepted alive Link to Nucleotide Sequence:NM_007728.6Link to Protein Sequence:NP_031754.1Re-query CCDS DB by Nucleotide ID:NM_007728Re-query CCDS DB by Protein ID:NP_031754Link to BLAST:NP_031754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185764.1 552 Q62507 552 100% 0 0
NP_031754.1 552 Q62507 552 100% 0 0

Chromosomal Locations for CCDS 25901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51593624 51593657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51593738 51593791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51595335 51595491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51596444 51596577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51597015 51597077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51598028 51598072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51598152 51598299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51601814 51601917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51602647 51602873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51603196 51603712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51604857 51605032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGCCCTCGTCCAGGATCCCTGCTCTCTGCCTCGGTGCGTGGCTGCTGCTGCTGCTGCTGCCCCGGTTCG
CGCGCGCCGAGGGAGCGGTTCCCATTCCTGTCACCTGCTTTACCAGAGGCCTGGATATCCGAAAAGAGAA
AGCAGATGTTCTCTGCCCAGGAGGCTGCTCTCTTGAGGAATTCTCTGTGTTTGGGAACATAGTGTATGCG
TCAGTGTCCAGCATCTGCGGCGCTGCTGTCCATAGGGGAGTGATTGGCACCTCAGGGGGACCTGTGCGTG
TCTACAGCCTTCCTGGTCGAGAGAACTACTCCTCGGTAGATGCCAACGGCATCCAGTCTCAGATGCTTTC
CCGATGGTCCGCGTCCTTCGCTGTGACCAAAGGCAAAAGCAGTACCCAGGAAGCCACAGGACGGGCAGTG
TCCACAGCCCACCCACCTTCAGGTAAAAGACTAAAGAAGACACCAGAGAAGAAGACTGGCAACAAAGACT
GTAAGGCAGACATTGCATTTCTCATTGATGGAAGCTTCAATATTGGGCAGCGCCGATTTAATTTGCAGAA
GAATTTTGTTGGGAAAGTGGCACTAATGTTGGGAATTGGAACAGAAGGACCACACGTGGGTCTCGTTCAA
GCCAGTGAACACCCCAAAATAGAATTTTACTTGAAAAACTTTACTTCAGCCAAAGATGTCTTGTTTGCCA
TAAAAGAAGTAGGTTTCCGAGGGGGTAACTCCAACACAGGAAAAGCCTTGAAGCACACTGCTCAGAAATT
CTTTACAGCAGACACTGGTGTGAGAAAAGGAATACCAAAAGTGGTGGTAGTGTTTATTGATGGTTGGCCC
TCTGATGACATTGAGGAAGCAGGCATTGTGGCCAGAGAGTTTGGTGTCAATGTATTTATAGTTTCTGTGG
CCAAGCCCATTCCTGAAGAACTGGGGATGGTTCAAGATGTTGCATTTGTTGACAAGGCTGTGTGTCGGAA
TAATGGCTTCTTCTCTTATCACATGCCCAACTGGTTTGGCACTACAAAATATGTGAAGCCTCTGGTGCAG
AAGCTCTGTACGCACGAACAGATGATGTGCAGCAAAACCTGCTACAACTCAGTGAACATTGCCTTTCTGA
TTGACGGCTCCAGCAGTGTTGGAGATAGCAATTTCCGCCTCATGCTAGAATTTGTTTCTAACATAGCGAA
GACATTTGAAATCTCAGACATTGGAGCCAAGATAGCTGCTGTACAGTTCACTTATGACCAGCGCACCGAG
TTCAGTTTCACTGACTATAATACCAAAGAGAACGTCCTAGCTGTCCTAGCGAACATCCGCTACATGAGTG
GTGGCACAGCTACTGGTGATGCCATCGCCTTTACTGTTAGAAATGTATTTGGTCCCATAAGGGACAGCCC
CAACAAAAACTTCCTGGTTATTGTCACAGATGGGCAGTCCTATGATGATGTCCGAGGCCCTGCTGCAGCT
GCCCATGATGCAGGTATCACCATCTTCTCTGTTGGTGTGGCTTGGGCACCGCTGGATGACCTGAGAGATA
TGGCCTCTAAACCCAAAGAGTCACACGCTTTCTTTACCAGAGAGTTCACAGGGTTAGAACCAATTGTCTC
TGACGTCATCAGAGGCATTTGTAGAGACTTCTTAGAATCCCAGCAATAA

Translation (552 aa):
MPSSRIPALCLGAWLLLLLLPRFARAEGAVPIPVTCFTRGLDIRKEKADVLCPGGCSLEEFSVFGNIVYA
SVSSICGAAVHRGVIGTSGGPVRVYSLPGRENYSSVDANGIQSQMLSRWSASFAVTKGKSSTQEATGRAV
STAHPPSGKRLKKTPEKKTGNKDCKADIAFLIDGSFNIGQRRFNLQKNFVGKVALMLGIGTEGPHVGLVQ
ASEHPKIEFYLKNFTSAKDVLFAIKEVGFRGGNSNTGKALKHTAQKFFTADTGVRKGIPKVVVVFIDGWP
SDDIEEAGIVAREFGVNVFIVSVAKPIPEELGMVQDVAFVDKAVCRNNGFFSYHMPNWFGTTKYVKPLVQ
KLCTHEQMMCSKTCYNSVNIAFLIDGSSSVGDSNFRLMLEFVSNIAKTFEISDIGAKIAAVQFTYDQRTE
FSFTDYNTKENVLAVLANIRYMSGGTATGDAIAFTVRNVFGPIRDSPNKNFLVIVTDGQSYDDVRGPAAA
AHDAGITIFSVGVAWAPLDDLRDMASKPKESHAFFTREFTGLEPIVSDVIRGICRDFLESQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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