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Report for CCDS25667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25667.1 Under review, update Mus musculus 11 Qrich2 23 108 98 CCDS HistoryNCBI Gene:217341Re-query CCDS DB by CCDS ID:25667.1Re-query CCDS DB by GeneID:217341See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093909.11 ENSMUSP00000091437.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093909.11Link to Ensembl Protein Viewer:ENSMUSP00000091437.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093909Re-query CCDS DB by Protein ID:ENSMUSP00000091437
Original member NCBI NM_001033267.2 NP_001028439.1 Updated not alive Link to Nucleotide Sequence:NM_001033267.2Link to Protein Sequence:NP_001028439.1Re-query CCDS DB by Nucleotide ID:NM_001033267Re-query CCDS DB by Protein ID:NP_001028439
Current member NCBI NM_001033267.3 NP_001028439.2 Pending alive Link to Nucleotide Sequence:NM_001033267.3Link to Protein Sequence:NP_001028439.2Re-query CCDS DB by Nucleotide ID:NM_001033267Re-query CCDS DB by Protein ID:NP_001028439Link to BLAST:NP_001028439.2

Chromosomal Locations for CCDS 25667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116441355 116441554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116442913 116443113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116443745 116443832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116444482 116444617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116444953 116445153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116445600 116445701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116445950 116446015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116446475 116446596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116446763 116446927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116447083 116447157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116447264 116447386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116448159 116448413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116453539 116453583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGAGAACTCTGTCTCTGAGGCGTCTCTTTACCTACAGGATCAGCTGGACAAGCTCAGAACCATCATTG
AGAGCATGCTGGGCAGCTCCTCCACGCTGCTCTCCATGAGCATAACCCCACACAAGTCCACCGCCTGCCT
AGTGCCCGGCCAGATCGACCCCGAGGCCACCTGTCCGGCCTGCAGTCTGGATGTGAGCCACCAAGTCAGT
CTGCTGGTCCAGCGCTACGAGCAGCTACAGGACATGGTCAGTGGCCTCGCTGCCTCCAGACCCTCCAAGA
AGGCCAAGCTGCAGGGCCAGGATGAGGAGCTGCTGGGCCACGTGCAGAGCGCCATCCTACAAGTCCAGGG
TGACTGTGAGAAGCTCAACATTACCACGAGCAACCTCATTGAGGACCATCGGCAGAAGCAGAAAGACATT
GAAGTGCTGTATCAGGGGATAGAAAGGCTGGATAAGGAAAAGGCCAACAGAGAGCACCTGGAGATGGAGA
TTGATGAGAAAGCCGACAAGAGCGCTCTGGCATCCAAAGTGAGCCGGATCCAGTTTGATGCCACTACAGA
GCAGCTGAACCACATGATGCAGGAACTGGTGGCCAAGATGAGCGGACAGGAGCAAGACTGGCAGAAACTT
CTGGATAAGCTCCTGGCAGAGATGGACAGCAAGCTGGACCGCCTGGAGCTGGATCCGTTGAAGCAGATGC
TGGAGGACCGCTGGAAATCACTGCGGCAGCAGCTCAAAGAGCGCCCTCCACTCTACCAGGCCGACGAGGC
GGCTGCCATGCGGAGGCAGCTCTTGGCTCATTTCCACTGCTTGTCCTGTGACCGTCCCTTGGAGACAACT
GTGACTGGACAAGTCATCTCTGTGACCCCCATAATTTCGAGCATGCCAGGGCACCGTTCCGTCCGGCCTT
ACACTGTGTTTGAACTAGAGCAGATCCGACAGCAAAGCAGAAACCTGAAGCTGGGCAGCAGCTTCCCTCG
GGTTGACATGTCACAGATGGAGAGAAGCGTGGGGCGTCTGCACAGCATGCACTCCCGGATGCTGATGGAC
ATGGAGAAGGTGCAGGTCCACTTCGGAGGCTCTGTGAAGGCCAGCAGCCAGATGATCCGAGAGCTGCTGC
ACACCCAGTGCCTCAGCCACCCATGCTACAAACGGGGAGCAGACACAGCAGATTACAGCTACTCGACTGT
ATCCCGTCGCTGTGGGGGCAGCCACACCCTCACCTACCCCTACCGGCGAAACCGCCCGCAGCACCTGTCT
CCACTGGAGGAGATCCAGATCGCCATGAAGCATGATGAGGTTGACATCCTGGGCCTCGACGGACACATCT
ACAAGGGACGGATGGATACACGGTTGCCAGGCATCCTAGGGAAAGATGCCCCAGGAGTGACAAAACACAA
CAAGGCTAAGCTCCAGCAGCTCCAACAACTGCAGCAGCTGCAGCAGCTCCAACAACTGCAGCAGCTGCAG
CAGGCCCAGCATGCCCGGCCCCACGCACACAGGCAGCCAAGCCTGGGCAACATGATCTCGCCACCCTCTC
GGCCTCAGAGTGCACAGATGATAGCGGACAGCAAAGCAGTTCCTTCAGGGCAAAAGAAAGACAGACCAGT
CTCCTCTGAGGGGCGTCTCCTGCAGTCGAATGTGAGCCATTCATCCATCCCTACAGACATAGCCAGTCTG
CAGGGTAGCCAACAGGGGCTGAACATGCACATTGACGTGCCTCCCGGGGAGGGGCTGGAGGAGCCCACCC
GGGGACCACGGTCCACCGCTGCTCACTGA

Translation (592 aa):
MENSVSEASLYLQDQLDKLRTIIESMLGSSSTLLSMSITPHKSTACLVPGQIDPEATCPACSLDVSHQVS
LLVQRYEQLQDMVSGLAASRPSKKAKLQGQDEELLGHVQSAILQVQGDCEKLNITTSNLIEDHRQKQKDI
EVLYQGIERLDKEKANREHLEMEIDEKADKSALASKVSRIQFDATTEQLNHMMQELVAKMSGQEQDWQKL
LDKLLAEMDSKLDRLELDPLKQMLEDRWKSLRQQLKERPPLYQADEAAAMRRQLLAHFHCLSCDRPLETT
VTGQVISVTPIISSMPGHRSVRPYTVFELEQIRQQSRNLKLGSSFPRVDMSQMERSVGRLHSMHSRMLMD
MEKVQVHFGGSVKASSQMIRELLHTQCLSHPCYKRGADTADYSYSTVSRRCGGSHTLTYPYRRNRPQHLS
PLEEIQIAMKHDEVDILGLDGHIYKGRMDTRLPGILGKDAPGVTKHNKAKLQQLQQLQQLQQLQQLQQLQ
QAQHARPHAHRQPSLGNMISPPSRPQSAQMIADSKAVPSGQKKDRPVSSEGRLLQSNVSHSSIPTDIASL
QGSQQGLNMHIDVPPGEGLEEPTRGPRSTAAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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