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Report for CCDS25619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25619.1 Public Mus musculus 11 Cd300lf 23 108 98 CCDS HistoryNCBI Gene:246746Re-query CCDS DB by CCDS ID:25619.1Re-query CCDS DB by GeneID:246746See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051264.13 ENSMUSP00000053983.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051264.13Link to Ensembl Protein Viewer:ENSMUSP00000053983.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051264Re-query CCDS DB by Protein ID:ENSMUSP00000053983
Original member Current member NCBI NM_145634.3 NP_663609.2 Accepted alive Link to Nucleotide Sequence:NM_145634.3Link to Protein Sequence:NP_663609.2Re-query CCDS DB by Nucleotide ID:NM_145634Re-query CCDS DB by Protein ID:NP_663609Link to BLAST:NP_663609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663609.2 330 Q6SJQ7-2 330 100% 0 0

Chromosomal Locations for CCDS 25619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115116974 115117150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115117543 115117686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115118070 115118092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115120264 115120418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115124248 115124356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115126111 115126452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115133839 115133881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCATTTGTCATTGCTGGTCCCCTTTCTCTTCTGGATCACAGGCTGCTGCACGGCTGAGGATCCAGTCA
CAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACAGTGCAGTGCCGATATACCTCAGGCTG
GAAGGATTACAAGAAGTACTGGTGCCAAGGAGTTCCTCAGAGATCATGTAAGACTCTTGTTGAAACCGAT
GCATCAGAGCAGCTGGTGAAGAAGAACCGTGTGTCCATCAGGGACAACCAGAGAGACTTCATCTTCACAG
TGACCATGGAGGATCTGAGGATGAGCGATGCTGGCATTTACTGGTGTGGAATTACGAAAGGTGGACTTGA
TCCCATGTTTAAAGTTACTGTGAACATTGGCCCAGTGCCAACCATGCCCCCCATCACCTCCACCACCACC
ATCTTCACAGTGACAACCACAGTAAAAGAGACCAGCATGTTTCCAACGCTGACTAGCTACTACTCTGATA
ACGGGCATGGCGGTGGTGACAGTGGCGGTGGTGAAGATGGCGTCGGTGATGGGTTTCTGGATCTCAGTGT
GCTCCTCCCAGTCATCTCTGCAGTCCTGTTGCTTCTCCTGTTGGTGGCCTCGCTCTTTGCTTGGAGGATG
GTGAGGAGACAGAAGAAAGCTGCTGGGCCACCATCAGAGCAGGCACAGTCTCTGGAGGGTGATCTCTGTT
ATGCAGACCTGTCCCTGAAGCAGCCCAGAACCTCCCCTGGCTCCTCTTGGAAAAAGGGCTCCTCCATGTC
CTCCTCTGGCAAGGACCACCAAGAGGAAGTGGAATATGTCACCATGGCTCCCTTTCCCAGGGAGGAGGTT
TCATATGCCGCTCTGACTTTGGCCGGCTTGGGTCAGGAGCCTACTTATGGCAATACTGGCTGCCCCATCA
CCCACGTTCCCAGGACAGGCCTTGAAGAGGAGACCACAGAGTACAGCAGCATCAGGAGGCCCTTGCCTGC
AGCCATGCCTTAA

Translation (330 aa):
MHLSLLVPFLFWITGCCTAEDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETD
ASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVPTMPPITSTTT
IFTVTTTVKETSMFPTLTSYYSDNGHGGGDSGGGEDGVGDGFLDLSVLLPVISAVLLLLLLVASLFAWRM
VRRQKKAAGPPSEQAQSLEGDLCYADLSLKQPRTSPGSSWKKGSSMSSSGKDHQEEVEYVTMAPFPREEV
SYAALTLAGLGQEPTYGNTGCPITHVPRTGLEEETTEYSSIRRPLPAAMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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