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Report for CCDS25548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25548.1 Public Mus musculus 11 Map3k3 23 108 98 CCDS HistoryNCBI Gene:26406Re-query CCDS DB by CCDS ID:25548.1Re-query CCDS DB by GeneID:26406See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002044.9 ENSMUSP00000002044.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002044.9Link to Ensembl Protein Viewer:ENSMUSP00000002044.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000002044Re-query CCDS DB by Protein ID:ENSMUSP00000002044
Original member NCBI NM_011947.3 NP_036077.1 Updated not alive Link to Nucleotide Sequence:NM_011947.3Link to Protein Sequence:NP_036077.1Re-query CCDS DB by Nucleotide ID:NM_011947Re-query CCDS DB by Protein ID:NP_036077
Current member NCBI NM_011947.4 NP_036077.1 Accepted alive Link to Nucleotide Sequence:NM_011947.4Link to Protein Sequence:NP_036077.1Re-query CCDS DB by Nucleotide ID:NM_011947Re-query CCDS DB by Protein ID:NP_036077Link to BLAST:NP_036077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036077.1 626 Q61084 626 100% 0 0

Chromosomal Locations for CCDS 25548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106084930 106084933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106096991 106097112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106110744 106110784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106114184 106114283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106117490 106117603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106123786 106123906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106142425 106142558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106145686 106145759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106148565 106148632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106148814 106148906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106149482 106149673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106150270 106150418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106151009 106151140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106151618 106151747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106152217 106152394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106153966 106154194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGATGAACAAGAGGCATTAGACTCGATCATGAAGGACCTGGTGGCCCTCCAGATGAGCCGACGAACCC
GGTTGTCTGGATATGAGACCATGAAGAATAAGGACACAGGTCACCCAAACAGGCAGAGTGACGTCAGAAT
CAAGTTTGAACACAATGGGGAGAGACGAATTATAGCATTCAGCCGGCCTGTGAGATACGAAGATGTGGAG
CACAAGGTGACAACAGTCTTTGGGCAGCCTCTTGATTTGCATTATATGAATAATGAGCTCTCCATCCTGT
TGAAAAACCAAGATGATCTCGATAAAGCCATTGACATTTTGGATAGAAGCTCAAGTATGAAAAGCCTTAG
GATACTACTGTTATCCCAAGACAGAAACCATACTAGTTCCTCTCCCCACTCTGGAGTGTCCAGGCAGGTT
CGGATCAAGCCTTCCCAGTCTGCAGGGGATATAAATACCATCTACCAAGCTCCTGAGCCCAGAAGCAGGC
ACCTGTCTGTCAGCTCCCAGAACCCTGGCCGAAGCTCTCCTCCCCCGGGATATGTACCTGAGCGACAACA
GCACATTGCCCGGCAAGGATCCTATACGAGCATCAACAGCGAAGGTGAATTCATCCCAGAGACCAGCGAA
CAGTGTATGCTAGATCCCCTCAGCAGTGCCGAAAATTCCTTGTCAGGAAGCTGCCAATCCTTGGACAGGT
CAGCAGACAGCCCATCCTTCAGGAAATCACAAATGTCCCGAGCCCGGAGCTTCCCAGACAACAGAAAGGA
ATGCTCAGATCGGGAGACCCAGCTCTATGATAAAGGTGTCAAAGGTGGAACCTATCCCAGGCGCTACCAT
GTGTCTGTGCATCACAAAGACTACAATGATGGCAGAAGAACATTTCCCCGAATACGACGGCATCAAGGCA
ACCTATTCACTCTGGTGCCCTCAAGTCGCTCCTTGAGCACAAATGGCGAGAACATGGGTGTAGCTGTGCA
ATACCTGGACCCCCGTGGGCGCCTACGGAGTGCAGACAGTGAGAATGCCCTCACTGTGCAGGAAAGGAAT
GTGCCAACCAAATCTCCTAGTGCTCCCATCAATTGGCGTCGGGGGAAGCTCCTGGGTCAAGGTGCCTTCG
GCAGGGTCTACTTGTGCTATGATGTGGACACAGGACGTGAACTTGCTTCTAAGCAGGTCCAGTTTGACCC
AGATAGTCCTGAGACAAGCAAGGAGGTGAGTGCTCTGGAGTGTGAGATCCAGTTGCTGAAGAACCTGCAG
CATGAGCGCATTGTGCAGTACTACGGCTGCCTGCGGGACCGTGCTGAGAAGATCCTCACCATCTTTATGG
AGTATATGCCAGGGGGCTCTGTAAAAGACCAGTTGAAGGCCTACGGAGCTCTGACAGAGAGTGTGACCCG
CAAGTACACCCGGCAGATTCTGGAGGGCATGTCATACCTGCACAGCAACATGATTGTGCATCGGGACATC
AAGGGAGCCAATATCCTCCGAGACTCAGCTGGGAATGTGAAGCTTGGGGATTTTGGGGCCAGCAAACGCC
TACAGACCATCTGCATGTCAGGGACAGGCATTCGCTCTGTCACTGGCACACCCTACTGGATGAGTCCTGA
AGTCATCAGTGGCGAGGGCTATGGAAGAAAGGCAGACGTGTGGAGCCTGGGCTGTACTGTGGTGGAAATG
CTGACAGAGAAACCACCTTGGGCAGAGTATGAAGCTATGGCTGCCATTTTCAAGATTGCCACCCAGCCTA
CCAATCCTCAGCTGCCCTCTCACATCTCAGAACACGGCAGGGACTTCCTGAGGCGCATATTTGTGGAAGC
TCGTCAGAGACCCTCAGCTGAGGAGCTGCTCACACACCACTTTGCACAGCTAGTGTACTGA

Translation (626 aa):
MDEQEALDSIMKDLVALQMSRRTRLSGYETMKNKDTGHPNRQSDVRIKFEHNGERRIIAFSRPVRYEDVE
HKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQDRNHTSSSPHSGVSRQV
RIKPSQSAGDINTIYQAPEPRSRHLSVSSQNPGRSSPPPGYVPERQQHIARQGSYTSINSEGEFIPETSE
QCMLDPLSSAENSLSGSCQSLDRSADSPSFRKSQMSRARSFPDNRKECSDRETQLYDKGVKGGTYPRRYH
VSVHHKDYNDGRRTFPRIRRHQGNLFTLVPSSRSLSTNGENMGVAVQYLDPRGRLRSADSENALTVQERN
VPTKSPSAPINWRRGKLLGQGAFGRVYLCYDVDTGRELASKQVQFDPDSPETSKEVSALECEIQLLKNLQ
HERIVQYYGCLRDRAEKILTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDI
KGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEM
LTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHGRDFLRRIFVEARQRPSAEELLTHHFAQLVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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