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Report for CCDS255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
255.1 Public Homo sapiens 1 SRRM1 24 110 108 CCDS HistoryNCBI Gene:10250Re-query CCDS DB by CCDS ID:255.1Re-query CCDS DB by GeneID:10250See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323848.14 ENSP00000326261.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323848.14Link to Ensembl Protein Viewer:ENSP00000326261.8Re-query CCDS DB by Nucleotide ID:ENST00000323848Re-query CCDS DB by Protein ID:ENSP00000326261
Original member Current member NCBI NM_005839.4 NP_005830.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005839.4Link to Protein Sequence:NP_005830.2Re-query CCDS DB by Nucleotide ID:NM_005839Re-query CCDS DB by Protein ID:NP_005830Link to BLAST:NP_005830.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005830.2 904 Q8IYB3-1 904 100% 0 0

Chromosomal Locations for CCDS 255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24643327 24643347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24645984 24646073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24646667 24646789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24648859 24649029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24649971 24650086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24651409 24651612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24652434 24652628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24652913 24653032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24654855 24655129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24660719 24660799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24661310 24661396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24662660 24662804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24666815 24666925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24669123 24669587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24670120 24670315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24671386 24671595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24672182 24672286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGGACGCGGGATTTTTCCGCGGAACAAGTGCAGAACAGGATAATCGGTTCAGCAACAAACAGAAGAAAC
TACTGAAGCAGCTGAAATTTGCAGAATGCCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAGGT
TATAAAGCCTTGGATAACAAAAAGAGTAACGGAAATCCTTGGGTTTGAAGATGATGTTGTGATTGAGTTT
ATATTCAACCAGCTGGAAGTGAAGAATCCAGACTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGA
ATGGAAAAAATGCTCGAGAATTTATGGGAGAACTGTGGCCCCTGCTGCTAAGTGCACAAGAAAACATCGC
GGGAATCCCTTCTGCTTTCCTAGAACTGAAGAAAGAAGAAATAAAACAAAGACAGATTGAACAAGAAAAA
CTGGCATCTATGAAAAAGCAAGATGAAGACAAAGATAAAAGAGATAAGGAAGAAAAAGAAAGCAGCAGAG
AAAAAAGGGAGCGGTCTCGTAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTC
CCCTGTCAGGAGAGAGAGAAAGCGCAGTCATTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGTCCT
TCCCCTGCTCCAGAAAAGAAGGAAAAAACTCCAGAGCTCCCAGAACCTTCAGTGAAAGTAAAAGAACCTT
CAGTACAAGAGGCTACTTCTACTAGTGACATTCTGAAAGTTCCCAAACCTGAACCTATACCAGAGCCTAA
AGAACCTTCTCCGGAAAAAAATTCCAAAAAAGAAAAGGAGAAGGAGAAGACCCGACCACGATCTCGGTCA
CGCTCCAAATCAAGATCCCGGACGCGGTCCCGCTCTCCTTCTCACACTCGACCTAGACGGCGCCATAGAT
CCCGATCAAGATCGTATTCACCTAGAAGGCGGCCAAGCCCAAGAAGGCGGCCATCTCCTCGAAGAAGAAC
TCCGCCAAGAAGAATGCCTCCTCCACCAAGGCATAGAAGGAGTAGATCTCCAGTAAGACGAAGAAGACGT
TCGTCAGCATCCTTGTCTGGGAGTAGCTCATCATCCTCTTCATCTCGTTCACGGTCACCACCAAAGAAGC
CTCCCAAGAGGACATCCAGCCCCCCTCGGAAAACTCGTAGGTTATCTCCTTCAGCAAGTCCTCCAAGGCG
AAGGCACAGGCCATCACCTCCTGCAACTCCACCACCCAAAACTCGGCATTCCCCTACACCCCAGCAGTCA
AACCGTACAAGAAAAAGTCGTGTTTCTGTGTCTCCAGGGAGAACTTCAGGTAAAGTGACAAAACATAAAG
GTACTGAGAAAAGAGAATCCCCTTCACCAGCACCGAAGCCTAGAAAAGTAGAGTTATCTGAATCGGAAGA
AGATAAAGGTGGCAAAATGGCTGCAGCAGATTCTGTGCAGCAGAGACGCCAATACAGACGACAAAACCAG
CAGTCTTCATCTGACTCTGGCTCCTCCTCCTCCTCAGAAGATGAACGACCCAAGAGATCCCATGTGAAGA
ATGGTGAGGTTGGCAGGCGGCGGAGACATTCCCCTTCCCGGAGTGCTTCTCCATCACCACGAAAGCGCCA
AAAAGAGACTTCCCCTCGTGGTAGACGGAGGAGAAGTCCATCCCCACCACCCACCAGAAGGCGACGGTCT
CCTTCTCCCGCCCCTCCTCCTCGACGGCGCAGGACTCCCACACCACCACCACGACGAAGGACTCCTTCTC
CTCCCCCACGTCGGCGCTCACCTTCTCCTAGAAGATACTCTCCTCCAATACAGAGGAGATACTCTCCTTC
TCCACCTCCAAAGAGAAGAACGGCTTCACCTCCTCCCCCTCCTAAACGAAGAGCATCACCATCTCCACCA
CCAAAGCGGCGGGTCTCCCATTCTCCACCTCCCAAACAAAGAAGCTCCCCAGTCACCAAGAGACGTTCAC
CTTCATTATCATCCAAGCATAGGAAAGGGTCTTCCCCAAGCCGCTCTACCCGGGAGGCCCGATCACCACA
ACCAAACAAACGGCATTCGCCCTCACCACGGCCTCGAGCTCCTCAGACCTCCTCAAGTCCTCCACCCGTT
CGAAGAGGAGCGTCGTCATCACCCCAAAGAAGGCAGTCCCCGTCTCCAAGTACTAGGCCCATTAGGAGAG
TCTCCAGGACTCCGGAACCTAAAAAGATAAAAAAGGCTGCTTCCCCAAGCCCACAGTCTGTAAGAAGGGT
CTCATCCTCCCGATCTGTCTCCGGGTCTCCTGAGCCAGCAGCTAAAAAGCCCCCAGCACCTCCATCCCCC
GTCCAGTCTCAGTCACCGTCTACAAACTGGTCACCAGCTGTACCGGTCAAAAAGGCCAAAAGCCCAACAC
CGAGCCCATCACCGCCAAGAAATTCAGATCAGGAAGGAGGTGGAAAGAAAAAGAAGAAAAAGAAGGACAA
GAAACACAAAAAGGATAAGAAGCACAAGAAGCACAAAAAACACAAGAAGGAAAAGGCTGTGGCTGCAGCT
GCTGCAGCTGCTGTGACCCCTGCAGCCATTGCAGCTGCCACAACCACATTAGCACAGGAAGAGCCAGTGG
CAGCGCCAGAGCCGAAGAAGGAGACTGAAAGTGAAGCTGAAGATAACCTTGATGATTTAGAAAAGCACCT
GCGTGAAAAGGCCCTGAGATCAATGAGGAAGGCCCAAGTGTCCCCACAGTCTTAG

Translation (904 aa):
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEF
IFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEK
LASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSP
SPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRS
RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRR
SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQS
NRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQ
QSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRS
PSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPP
PKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPV
RRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSP
VQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAA
AAAAVTPAAIAAATTTLAQEEPVAAPEPKKETESEAEDNLDDLEKHLREKALRSMRKAQVSPQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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