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Report for CCDS25496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25496.1 Public Mus musculus 11 Slc4a1 23 108 98 CCDS HistoryNCBI Gene:20533Re-query CCDS DB by CCDS ID:25496.1Re-query CCDS DB by GeneID:20533See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006749.9 ENSMUSP00000006749.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006749.9Link to Ensembl Protein Viewer:ENSMUSP00000006749.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000006749Re-query CCDS DB by Protein ID:ENSMUSP00000006749
Original member NCBI NM_011403.2 NP_035533.1 Updated not alive Link to Nucleotide Sequence:NM_011403.2Link to Protein Sequence:NP_035533.1Re-query CCDS DB by Nucleotide ID:NM_011403Re-query CCDS DB by Protein ID:NP_035533
Current member NCBI NM_011403.3 NP_035533.1 Accepted alive Link to Nucleotide Sequence:NM_011403.3Link to Protein Sequence:NP_035533.1Re-query CCDS DB by Nucleotide ID:NM_011403Re-query CCDS DB by Protein ID:NP_035533Link to BLAST:NP_035533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035533.1 929 P04919-1 929 100% 0 0

Chromosomal Locations for CCDS 25496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102350287 102350367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102351102 102351275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102351357 102351526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102352439 102352692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102353191 102353357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102353824 102353913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102354266 102354436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102356077 102356271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102356380 102356528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102356717 102356929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102357041 102357251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102357923 102358104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102358218 102358299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102358404 102358527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102359010 102359145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102359225 102359405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102360147 102360220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102361141 102361261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102361381 102361395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGGGGACATGCGGGACCACGAGGAAGTGCTGGAGATCCCAGATCGAGACAGCGAAGAAGAACTGGAGA
ACATAATAGGACAGATAGCATATAGAGACCTAACCATCCCTGTGACCGAGATGCAGGACCCAGAAGCTCT
TCCCACAGAGCAAACAGCCACAGACTACGTCCCCAGCAGTACCTCCACACCGCACCCAAGCTCCGGTCAG
GTCTATGTGGAGCTTCAGGAACTGATGATGGACCAGAGGAACCAGGAACTACAATGGGTGGAGGCAGCGC
ACTGGATAGGGCTGGAGGAAAACCTTCGAGAGGATGGTGTATGGGGTCGCCCACATCTATCTTACCTGAC
CTTCTGGAGCCTTCTAGAACTGCAGAAGGTCTTCTCAAAAGGCACCTTCCTTCTGGGTCTGGCAGAGACA
TCCCTGGCTGGGGTGGCCAATCACCTTCTAGACTGCTTCATCTACGAGGATCAGATTCGGCCTCAGGACC
GAGAAGAACTGCTCCGGGCTCTGCTACTCAAACGCAGCCATGCTGAGGACCTAGGGAATCTGGAGGGGGT
GAAGCCCGCCGTCCTGACCCGCTCTGGGGGCGCCTCTGAGCCTCTGCTTCCTCACCAGCCATCGCTGGAG
ACCCAGCTGTACTGCGGACAGGCAGAGGGGGGCTCAGAAGGACCCTCAACATCTGGGACTCTGAAGATCC
CCCCAGATTCAGAAACCACACTGGTGCTAGTGGGCCGGGCTAATTTTCTGGAGAAGCCTGTACTGGGCTT
CGTGAGACTGAAGGAGGCCGTGCCTCTGGAGGACCTGGTGTTGCCAGAGCCTGTGGGCTTCCTTCTTGTT
CTGCTGGGACCTGAGGCTCCGCATGTCGACTATACCCAGCTGGGCAGGGCTGCAGCAACTCTCATGACAG
AAAGAGTGTTCCGCATTACCGCCTCCATGGCGCATAACCGAGAGGAGCTGCTGCGCTCTCTGGAGAGCTT
TCTGGACTGTAGCCTGGTGCTGCCGCCCACAGACGCCCCTTCAGAAAAAGCTCTGCTTAACCTGGTACCG
GTGCAGAAGGAGCTGCTTAGGAGGCGGTACCTGCCCAGCCCCGCCAAGCCAGACCCCAACTTGTACAACA
CTCTAGACTTGAACGGGGGAAAAGGGGGCCCTGGTGACGAAGACGACCCTCTACGGCGCACAGGCCGGAT
CTTTGGAGGCCTGATCCGTGATATCCGGCGCCGTTATCCTTACTACCTGAGTGACATCACCGATGCGCTC
AGTCCCCAGGTGTTGGCTGCTGTCATCTTCATCTACTTTGCTGCCTTGTCACCTGCCGTCACCTTCGGCG
GCCTCCTGGGAGAAAAGACCCGGAACTTGATGGGGGTGTCGGAGCTGCTCATCTCCACAGCAGTGCAAGG
CATTCTCTTTGCTCTCCTGGGGGCACAGCCCCTGCTTGTGCTAGGCTTCTCAGGACCCCTGCTGGTGTTT
GAAGAAGCCTTCTTCTCGTTCTGTGAAAGCAATAACCTGGAGTATATCGTGGGCCGCGCGTGGATCGGCT
TCTGGCTCATCCTGCTCGTGATGTTGGTGGTGGCCTTTGAAGGCAGCTTCCTCGTCCAATACATCTCCCG
ATACACCCAGGAGATCTTCTCCTTCCTCATCTCCCTCATCTTCATCTATGAGACTTTCTCCAAGCTGATC
AAGATTTTCCAGGACTACCCACTACAACAGACTTATGCCCCTGTTGTGATGAAGCCCAAACCTCAGGGCC
CTGTGCCCAACACAGCCCTCTTCTCTCTTGTGCTCATGGCTGGCACCTTCCTACTTGCCATGACGCTACG
AAAGTTCAAGAACAGCACCTACTTCCCTGGCAAGCTGCGTAGAGTCATTGGGGACTTCGGGGTCCCCATC
TCCATCCTGATAATGGTCCTGGTGGATTCCTTCATCAAGGGCACCTACACACAGAAACTCTCCGTGCCTG
ATGGCCTCAAAGTGTCCAACTCCTCCGCCCGGGGCTGGGTCATCCACCCTCTGGGGCTGTATAGACTTTT
CCCCACGTGGATGATGTTTGCCTCCGTTCTGCCCGCCCTGCTTGTCTTCATTCTCATTTTCCTTGAGTCT
CAGATCACCACGCTGATTGTCAGTAAACCAGAACGGAAGATGATCAAGGGCTCTGGCTTCCACCTGGACC
TGTTGCTGGTCGTTGGCATGGGTGGGGTGGCTGCCCTCTTTGGGATGCCTTGGCTCAGTGCCACCACTGT
AAGATCTGTTACCCACGCCAATGCCCTCACAGTCATGGGGAAGGCCAGTGGTCCAGGGGCTGCAGCCCAG
ATCCAAGAGGTCAAGGAACAGCGGATCAGTGGGCTCCTGGTCTCTGTGCTTGTGGGACTGTCCATCCTCA
TGGAACCTATCCTGTCCCGCATCCCCCTGGCTGTGCTCTTCGGCATCTTCCTGTACATGGGAGTCACATC
CCTCAGTGGCATCCAGCTCTTTGACCGCATCTTGCTCCTGTTCAAGCCACCCAAGTACCACCCGGATGTG
CCCTTTGTCAAGAGGGTGAAGACCTGGCGCATGCACCTCTTCACGGGCATCCAGATCATCTGCCTGGCTG
TGCTGTGGGTGGTGAAGTCCACTCCTGCCTCGCTGGCCTTGCCCTTCGTCCTCATCCTCACAGTGCCTCT
CCGTCGTCTCATCCTCCCGCTCATCTTCAGAGAGCTGGAACTCCAGTGTCTGGACGGTGATGATGCCAAA
GTGACCTTTGACGAGGAGAATGGCCTGGATGAATATGACGAAGTGCCCATGCCTGTGTGA

Translation (929 aa):
MGDMRDHEEVLEIPDRDSEEELENIIGQIAYRDLTIPVTEMQDPEALPTEQTATDYVPSSTSTPHPSSGQ
VYVELQELMMDQRNQELQWVEAAHWIGLEENLREDGVWGRPHLSYLTFWSLLELQKVFSKGTFLLGLAET
SLAGVANHLLDCFIYEDQIRPQDREELLRALLLKRSHAEDLGNLEGVKPAVLTRSGGASEPLLPHQPSLE
TQLYCGQAEGGSEGPSTSGTLKIPPDSETTLVLVGRANFLEKPVLGFVRLKEAVPLEDLVLPEPVGFLLV
LLGPEAPHVDYTQLGRAAATLMTERVFRITASMAHNREELLRSLESFLDCSLVLPPTDAPSEKALLNLVP
VQKELLRRRYLPSPAKPDPNLYNTLDLNGGKGGPGDEDDPLRRTGRIFGGLIRDIRRRYPYYLSDITDAL
SPQVLAAVIFIYFAALSPAVTFGGLLGEKTRNLMGVSELLISTAVQGILFALLGAQPLLVLGFSGPLLVF
EEAFFSFCESNNLEYIVGRAWIGFWLILLVMLVVAFEGSFLVQYISRYTQEIFSFLISLIFIYETFSKLI
KIFQDYPLQQTYAPVVMKPKPQGPVPNTALFSLVLMAGTFLLAMTLRKFKNSTYFPGKLRRVIGDFGVPI
SILIMVLVDSFIKGTYTQKLSVPDGLKVSNSSARGWVIHPLGLYRLFPTWMMFASVLPALLVFILIFLES
QITTLIVSKPERKMIKGSGFHLDLLLVVGMGGVAALFGMPWLSATTVRSVTHANALTVMGKASGPGAAAQ
IQEVKEQRISGLLVSVLVGLSILMEPILSRIPLAVLFGIFLYMGVTSLSGIQLFDRILLLFKPPKYHPDV
PFVKRVKTWRMHLFTGIQIICLAVLWVVKSTPASLALPFVLILTVPLRRLILPLIFRELELQCLDGDDAK
VTFDEENGLDEYDEVPMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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