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Report for CCDS25494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25494.1 Public Mus musculus 11 Tmub2 23 108 98 CCDS HistoryNCBI Gene:72053Re-query CCDS DB by CCDS ID:25494.1Re-query CCDS DB by GeneID:72053See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036376.12 ENSMUSP00000047600.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036376.12Link to Ensembl Protein Viewer:ENSMUSP00000047600.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036376Re-query CCDS DB by Protein ID:ENSMUSP00000047600
Original member Current member EBI ENSMUST00000156326.1 ENSMUSP00000116327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156326.1Link to Ensembl Protein Viewer:ENSMUSP00000116327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156326Re-query CCDS DB by Protein ID:ENSMUSP00000116327
Original member Current member NCBI NM_001302505.2 NP_001289434.1 Accepted alive Link to Nucleotide Sequence:NM_001302505.2Link to Protein Sequence:NP_001289434.1Re-query CCDS DB by Nucleotide ID:NM_001302505Re-query CCDS DB by Protein ID:NP_001289434Link to BLAST:NP_001289434.1
Original member Current member NCBI NM_028076.4 NP_082352.1 Accepted alive Link to Nucleotide Sequence:NM_028076.4Link to Protein Sequence:NP_082352.1Re-query CCDS DB by Nucleotide ID:NM_028076Re-query CCDS DB by Protein ID:NP_082352Link to BLAST:NP_082352.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289434.1 319 Q3V209-1 319 100% 0 0
NP_082352.1 319 Q3V209-1 319 100% 0 0

Chromosomal Locations for CCDS 25494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102285684 102285718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102287308 102287871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102288076 102288436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGATTTCACGTCTTCTTCAAAACAACCTTATGAGCGTGGACCCAGTCAGCAGCCAGGCCATGGAGCTCT
CTGATGTCACCCTCATTGAGGGTGTGGGTAACGAGGTGATGGTGGTAGCAGGCGTGGTGGCGCTGACTCT
AGCCCTGGTCCTAGCCTGGCTCTCCACCTATGTAGCAGACAGTGGTAACAACCAGCTGCTGGGCACCATT
GTGTCAGCAGGTGACACGTCTGTTCTCCACCTGGGCCATGTGGACCAGCTGGTAAACCAAGGCACTCCAG
AGCCAACCGAACACCCCCATCCATCAGGGGGCAATGATGACAAGGCTGAAGAGACCAGTGACAGTGGGGG
AGACGCCACTGGAGAACCTGGAGCTAGGGGAGAGATGGAGCCCAGCCTGGAGCATCTCCTGGACATCCAA
GGCCTGCCTAAAAGGCAAGCAGGCCTGGGGAGCAGTCGCCCAGAAGCCCCGCTGGGGTTAGATGATGGCT
CCTGCCTCTCTCCCAGCCCCAGCCTCATCAATGTTCGCCTCAAGTTCCTCAATGACACCGAGGAGCTAGC
TGTGGCCAGGCCAGAGGACACTGTGGGTACCCTAAAAAGCAAATACTTCCCTGGACAAGAGAGCCAAATG
AAGTTGATCTACCAGGGTCGGCTGCTGCAGGACCCAGCACGCACACTGAGTTCCCTGAACATTACCAACA
ACTGCGTGATCCACTGCCACCGCTCACCCCCAGGGGCAGCAGTTTCTGGCCCCTCAGCCTCCTTGACCCC
AACCACTGAGCAATCTAGCCTTGGTGTCAACGTGGGCAGCCTCATGGTGCCTGTGTTTGTGGTGCTCTTG
GGTGTGGTCTGGTACTTCCGTATCAATTACCGCCAGTTCTTCACTGGACCTGCCACTATCTCCTTGGTTG
GAGTCACAGTCTTCTTCAGCATCCTGGTATTTGGGATGTATGGAAGATAA

Translation (319 aa):
MISRLLQNNLMSVDPVSSQAMELSDVTLIEGVGNEVMVVAGVVALTLALVLAWLSTYVADSGNNQLLGTI
VSAGDTSVLHLGHVDQLVNQGTPEPTEHPHPSGGNDDKAEETSDSGGDATGEPGARGEMEPSLEHLLDIQ
GLPKRQAGLGSSRPEAPLGLDDGSCLSPSPSLINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQM
KLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAAVSGPSASLTPTTEQSSLGVNVGSLMVPVFVVLL
GVVWYFRINYRQFFTGPATISLVGVTVFFSILVFGMYGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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