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Report for CCDS2548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2548.1 Public Homo sapiens 2 SEPTIN2 24 110 108 CCDS HistoryNCBI Gene:4735Re-query CCDS DB by CCDS ID:2548.1Re-query CCDS DB by GeneID:4735See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360051.7 ENSP00000353157.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360051.7Link to Ensembl Protein Viewer:ENSP00000353157.3Re-query CCDS DB by Nucleotide ID:ENST00000360051Re-query CCDS DB by Protein ID:ENSP00000353157
Original member Current member EBI ENST00000391971.7 ENSP00000375832.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391971.7Link to Ensembl Protein Viewer:ENSP00000375832.2Re-query CCDS DB by Nucleotide ID:ENST00000391971Re-query CCDS DB by Protein ID:ENSP00000375832
Original member Current member EBI ENST00000391973.6 ENSP00000375834.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391973.6Link to Ensembl Protein Viewer:ENSP00000375834.2Re-query CCDS DB by Nucleotide ID:ENST00000391973Re-query CCDS DB by Protein ID:ENSP00000375834
Original member Current member EBI ENST00000402092.6 ENSP00000385172.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402092.6Link to Ensembl Protein Viewer:ENSP00000385172.2Re-query CCDS DB by Nucleotide ID:ENST00000402092Re-query CCDS DB by Protein ID:ENSP00000385172
Original member Current member NCBI NM_001008491.3 NP_001008491.1 Accepted alive Link to Nucleotide Sequence:NM_001008491.3Link to Protein Sequence:NP_001008491.1Re-query CCDS DB by Nucleotide ID:NM_001008491Re-query CCDS DB by Protein ID:NP_001008491Link to BLAST:NP_001008491.1
Original member Current member NCBI NM_001008492.3 NP_001008492.1 Accepted alive Link to Nucleotide Sequence:NM_001008492.3Link to Protein Sequence:NP_001008492.1Re-query CCDS DB by Nucleotide ID:NM_001008492Re-query CCDS DB by Protein ID:NP_001008492Link to BLAST:NP_001008492.1
Original member Current member NCBI NM_001321030.3 NP_001307959.1 Accepted alive Link to Nucleotide Sequence:NM_001321030.3Link to Protein Sequence:NP_001307959.1Re-query CCDS DB by Nucleotide ID:NM_001321030Re-query CCDS DB by Protein ID:NP_001307959Link to BLAST:NP_001307959.1
Original member Current member NCBI NM_001321031.2 NP_001307960.1 Accepted alive Link to Nucleotide Sequence:NM_001321031.2Link to Protein Sequence:NP_001307960.1Re-query CCDS DB by Nucleotide ID:NM_001321031Re-query CCDS DB by Protein ID:NP_001307960Link to BLAST:NP_001307960.1
Original member Current member NCBI NM_001321032.2 NP_001307961.1 Accepted alive Link to Nucleotide Sequence:NM_001321032.2Link to Protein Sequence:NP_001307961.1Re-query CCDS DB by Nucleotide ID:NM_001321032Re-query CCDS DB by Protein ID:NP_001307961Link to BLAST:NP_001307961.1
Original member Current member NCBI NM_001321033.3 NP_001307962.1 Accepted alive Link to Nucleotide Sequence:NM_001321033.3Link to Protein Sequence:NP_001307962.1Re-query CCDS DB by Nucleotide ID:NM_001321033Re-query CCDS DB by Protein ID:NP_001307962Link to BLAST:NP_001307962.1
Original member Current member NCBI NM_001321034.2 NP_001307963.1 Accepted alive Link to Nucleotide Sequence:NM_001321034.2Link to Protein Sequence:NP_001307963.1Re-query CCDS DB by Nucleotide ID:NM_001321034Re-query CCDS DB by Protein ID:NP_001307963Link to BLAST:NP_001307963.1
Original member Current member NCBI NM_001321035.2 NP_001307964.1 Accepted alive Link to Nucleotide Sequence:NM_001321035.2Link to Protein Sequence:NP_001307964.1Re-query CCDS DB by Nucleotide ID:NM_001321035Re-query CCDS DB by Protein ID:NP_001307964Link to BLAST:NP_001307964.1
Original member Current member NCBI NM_001349289.2 NP_001336218.1 Accepted alive Link to Nucleotide Sequence:NM_001349289.2Link to Protein Sequence:NP_001336218.1Re-query CCDS DB by Nucleotide ID:NM_001349289Re-query CCDS DB by Protein ID:NP_001336218Link to BLAST:NP_001336218.1
Original member Current member NCBI NM_001349290.2 NP_001336219.1 Accepted alive Link to Nucleotide Sequence:NM_001349290.2Link to Protein Sequence:NP_001336219.1Re-query CCDS DB by Nucleotide ID:NM_001349290Re-query CCDS DB by Protein ID:NP_001336219Link to BLAST:NP_001336219.1
Original member Current member NCBI NM_001349291.2 NP_001336220.1 Accepted alive Link to Nucleotide Sequence:NM_001349291.2Link to Protein Sequence:NP_001336220.1Re-query CCDS DB by Nucleotide ID:NM_001349291Re-query CCDS DB by Protein ID:NP_001336220Link to BLAST:NP_001336220.1
Original member Current member NCBI NM_004404.5 NP_004395.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004404.5Link to Protein Sequence:NP_004395.1Re-query CCDS DB by Nucleotide ID:NM_004404Re-query CCDS DB by Protein ID:NP_004395Link to BLAST:NP_004395.1
Original member Current member NCBI NM_006155.3 NP_006146.1 Accepted alive Link to Nucleotide Sequence:NM_006155.3Link to Protein Sequence:NP_006146.1Re-query CCDS DB by Nucleotide ID:NM_006155Re-query CCDS DB by Protein ID:NP_006146Link to BLAST:NP_006146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008491.1 361 Q15019-1 361 100% 0 0
NP_001008492.1 361 Q15019-1 361 100% 0 0
NP_001307959.1 361 Q15019-1 361 100% 0 0
NP_001307960.1 361 Q15019-1 361 100% 0 0
NP_001307961.1 361 Q15019-1 361 100% 0 0
NP_001307962.1 361 Q15019-1 361 100% 0 0
NP_001307963.1 361 Q15019-1 361 100% 0 0
NP_001307964.1 361 Q15019-1 361 100% 0 0
NP_001336218.1 361 Q15019-1 361 100% 0 0
NP_001336219.1 361 Q15019-1 361 100% 0 0
NP_001336220.1 361 Q15019-1 361 100% 0 0
NP_004395.1 361 Q15019-1 361 100% 0 0
NP_006146.1 361 Q15019-1 361 100% 0 0

Chromosomal Locations for CCDS 2548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241324233 241324241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241325993 241326113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241335126 241335212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241335975 241336098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241337382 241337516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241337673 241337790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241342992 241343093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241343752 241343897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241346166 241346249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241348134 241348191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241350073 241350174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTCTAAGCAACAGCCAACTCAGTTTATAAATCCAGAAACACCTGGCTATGTTGGATTTGCAAACCTCC
CCAATCAAGTTCACCGAAAATCAGTGAAAAAAGGTTTTGAGTTCACACTGATGGTGGTCGGTGAATCAGG
TCTAGGAAAATCGACTCTCATAAACAGCCTATTCCTAACTGATCTGTACCCAGAAAGAGTCATACCTGGA
GCAGCAGAAAAAATTGAAAGAACTGTCCAGATTGAGGCTTCAACTGTTGAAATTGAAGAGCGAGGGGTCA
AGCTACGCCTGACAGTGGTAGATACCCCTGGCTATGGTGACGCTATCAACTGCAGAGATTGTTTTAAGAC
AATTATCTCCTATATTGATGAGCAATTTGAGAGGTACCTGCATGACGAGAGCGGCTTGAACAGGCGGCAC
ATCATTGATAATAGGGTGCATTGTTGCTTTTACTTTATTTCACCTTTTGGACATGGACTTAAGCCCTTAG
ATGTGGCGTTTATGAAGGCAATACACAACAAGGTGAATATTGTGCCTGTCATTGCAAAAGCTGACACTCT
CACCCTGAAGGAACGGGAGCGGCTGAAGAAAAGGATTCTGGATGAAATTGAAGAACATAACATCAAAATC
TATCACTTACCTGATGCAGAATCAGATGAAGATGAAGATTTTAAAGAGCAGACTAGACTTCTCAAGGCTA
GCATCCCATTCTCTGTGGTTGGATCCAATCAGTTGATTGAAGCCAAAGGAAAGAAGGTCAGAGGCCGCCT
CTACCCCTGGGGTGTTGTGGAAGTGGAGAACCCAGAGCACAATGACTTTCTGAAGCTGAGAACCATGCTC
ATCACCCACATGCAGGATCTCCAGGAGGTGACCCAGGACCTTCATTATGAAAACTTCCGTTCTGAGAGAC
TCAAGAGAGGCGGCAGGAAAGTGGAGAATGAGGACATGAATAAAGACCAGATCTTGCTGGAAAAAGAAGC
TGAGCTCCGCCGCATGCAAGAGATGATTGCAAGGATGCAGGCGCAGATGCAGATGCAGATGCAGGGCGGG
GATGGCGATGGCGGGGCTCTCGGGCACCACGTGTAA

Translation (361 aa):
MSKQQPTQFINPETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPG
AAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRH
IIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKI
YHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTML
ITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGG
DGDGGALGHHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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