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Report for CCDS25407.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25407.2 Public Mus musculus 11 Krt35 23 108 98 CCDS HistoryNCBI Gene:53617Re-query CCDS DB by CCDS ID:25407.2Re-query CCDS DB by GeneID:53617See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25407.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25407.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103127.3 ENSMUSP00000099416.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103127.3Link to Ensembl Protein Viewer:ENSMUSP00000099416.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103127Re-query CCDS DB by Protein ID:ENSMUSP00000099416
Original member Current member NCBI NM_016880.2 NP_058576.2 Accepted alive Link to Nucleotide Sequence:NM_016880.2Link to Protein Sequence:NP_058576.2Re-query CCDS DB by Nucleotide ID:NM_016880Re-query CCDS DB by Protein ID:NP_058576Link to BLAST:NP_058576.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058576.2 455 Q497I4 455 100% 0 0

Chromosomal Locations for CCDS 25407.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100092508 100092655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100092953 100093173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100093669 100093794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100093958 100094119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100094503 100094659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100094853 100094935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100095716 100096186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCTTCCAAATGCCTCAAGGCCAGCTTCTCCTCAGGATCTCTGAAGAGCCCGGGGAAAGCCGGAGGGG
GATCCACTCGCGTGTCCAACATGTACTCCAGCAGCTCTTGCAAGCTGCCCAGCCCTTCCCGTGGAGCCCG
GAGTTTCTCCGTGTGTTCCGCTGGCCTGGGGAGAGGCAATTACAGGGTATCCAGCTGCCTCCCAGCTCTC
TGCCTCCCAACGGGAGGCTTTGCCACCAGCTACGGCACGGGTGGAGGTTGGTTTGGAGAAGGCATCCTCA
CTGGTAATGAGAAGGAGACCATGCAGTCCCTGAATGACCGCCTGGCCAGCTATCTGGAGAAGGTGCGCCA
GCTGGAGCAGGAGAATGCCAGCCTGGAGAGCCGAATTCGGGAGTGGTGTGAGCAGCAGGTGCCCTATATG
TGCCCCGATTACCAGTCTTACTTCCGGACCATGGAGGAGCTCCAGAAGAAGACTCTTTGCAGCAAGGCAG
AGAACGCCAGGCTGGTGGTGCAGATTGACAATGCCAAGCTGGCTGCTGATGACTTCAGGACCAAGTATGA
GACTGAGGTTTCCCTGCGGCAGCTGGTGGAGGCTGACATCAATGGCCTGCGCAGAATCCTGGATGATCTG
ACTCTGTGCAAGGCTGACCTGGAAGCTCAGGTGGAGTCTCTGAAGGAAGAATTGCTTTGCCTCAAGAAGA
ACCATGAGGAGGAAGTGAACTCACTGCGCTGCCAGCTTGGCGATCGGCTCAATGTTGAGGTGGATGCTGC
TCCACCCGTTGACCTGAACCGCGTTCTGGATGAGATGAGGTGCCAGTATGAGACCTTGGTGGAGAATAAC
CGGAGGGATGCTGAAGACTGGTATGACACCCAGACCGAGGAACTGAACCAGCAGGTTGTGTCCAGCTCAG
AGCAGCTGCAGTCCTGCCAGTCGGACATCATTGAGTTGAGACGCACTGTCAACTCTCTGGAGATAGAGCT
GCAGGCCCAGCAGAGCATGAGAGATGCTTTGGACTCCACCCTGGCAGAGACAGAAGGCCGCTACAGCTCT
CAGCTGGCTCAGATGCAGTGCATGATCGGCAATGTGGAGTCCCAGCTTGGTGAGATCCGGGCTGACCTGG
AGCGTCAGAACCAGGAGTACCAGGTGCTGCTGGATGTCCGGGCCAGGCTGGAGTGTGAGATCAACACGTA
CAGGGGCCTGCTGGAGAGCGAGGACAGCAAGCTTCCCTGCAACCCGTGTGCCCCTGACTACTCTTCCTCC
AAGTCATGCCTCCCCTGCCTTCCTGCGGTCTCCTGCAGCACGGGCGCAGCTCGTACCACCTGCAGCCCCC
GCCCTGTCTGTGTGCCCTGCCCAGGGGGCCGGTTCTGA

Translation (455 aa):
MASKCLKASFSSGSLKSPGKAGGGSTRVSNMYSSSSCKLPSPSRGARSFSVCSAGLGRGNYRVSSCLPAL
CLPTGGFATSYGTGGGWFGEGILTGNEKETMQSLNDRLASYLEKVRQLEQENASLESRIREWCEQQVPYM
CPDYQSYFRTMEELQKKTLCSKAENARLVVQIDNAKLAADDFRTKYETEVSLRQLVEADINGLRRILDDL
TLCKADLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNRVLDEMRCQYETLVENN
RRDAEDWYDTQTEELNQQVVSSSEQLQSCQSDIIELRRTVNSLEIELQAQQSMRDALDSTLAETEGRYSS
QLAQMQCMIGNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDSKLPCNPCAPDYSSS
KSCLPCLPAVSCSTGAARTTCSPRPVCVPCPGGRF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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