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Report for CCDS25359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25359.1 Public Mus musculus 11 Psmd3 23 108 98 CCDS HistoryNCBI Gene:22123Re-query CCDS DB by CCDS ID:25359.1Re-query CCDS DB by GeneID:22123See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017365.14 ENSMUSP00000017365.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017365.14Link to Ensembl Protein Viewer:ENSMUSP00000017365.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000017365Re-query CCDS DB by Protein ID:ENSMUSP00000017365
Original member Current member NCBI NM_009439.1 NP_033465.1 Accepted alive Link to Nucleotide Sequence:NM_009439.1Link to Protein Sequence:NP_033465.1Re-query CCDS DB by Nucleotide ID:NM_009439Re-query CCDS DB by Protein ID:NP_033465Link to BLAST:NP_033465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033465.1 530 P14685 530 100% 0 0

Chromosomal Locations for CCDS 25359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98682730 98682937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98685482 98685672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98685934 98686071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98687678 98687814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98690463 98690653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98690916 98691019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98693383 98693497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98693579 98693698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98693805 98693908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98694138 98694293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98695363 98695413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98695523 98695600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGAAGCAGGAGGGCTCGGCGCGGCGCCGAGGCGCCGACAAGGCAAAGCCGCCGCCGGGAGGGGAACAAG
AACCGCCGCCACCGGCCCCCCAGGATGTGGAGATGAAAGAGGAGGCAGCAGCTGGGAGCGGCTCCACGGG
GGAGGGAGACGGCAAGGCAGCTGCGACCGAGCACTCCCAGAGAGAGCTGGACACTGTCACCTTAGAAGAC
ATCAAAGAGCACGTGAGACAGCTAGAGAAGGCTGTTTCCGGCAAGGAGCCTCGGTTCGTGCTGAGGGCGC
TGCGGATGCTGCCGTCCACGTCACGCCGCCTCAACCACTATGTTCTGTACAAGGCTGTGCATGGCTTCTT
CACCTCCAATAACGCCACTCGAGACTTCTTGCTACCCTTCCTAGAAGAACCCATGGACACAGAAGCCGAC
CTGCAGTTTCGTCCTCGCACAGGAAAAGCGGCATCAGCGCCTCTCCTGCCTGAGGTGGAAGCCTACCTGC
AGCTGCTCATGGTCATCTTCCTGATGAACAGCAAGCGCTACAAAGAGGCACAGAAAATCTCTGATGACCT
GATGCAGAAGATCAGCACTCAGAACCGCCGAGCCCTGGACCTCGTAGCTGCCAAGTGTTACTATTATCAC
GCCCGGGTCTATGAGTTCCTGGACAAGCTGGATGTGGTGCGCAGCTTCTTGCATGCCCGGCTCCGGACAG
CCACCCTGCGGCACGATGCTGACGGACAGGCTACCCTTTTGAACCTCCTGCTTCGGAATTACCTGCACTA
CAGCTTGTATGACCAGGCTGAGAAGCTGGTATCCAAGTCTGTGTTCCCTGAGCAAGCCAACAACAATGAG
TGGGCCAGGTACCTCTATTACACAGGGCGAATCAAGGCTATCCAGCTGGAGTACTCTGAAGCCCGGAGAA
CGATGACCAATGCCCTTCGAAAGGCTCCACAGCACACAGCTGTTGGCTTCAAACAGACGGTGCACAAGCT
TCTGATCGTGGTAGAGCTCCTGCTGGGGGAGATCCCAGACCGCCTGCAGTTCCGCCAGCCCTCCCTAAAG
CGCTCCCTCATGCCCTACTTCCTTCTCACCCAAGCTGTTAGGACAGGAAATCTTGCCAAGTTCAACCAAG
TTCTGGATCAGTTTGGGGAGAAGTTTCAAACGGATGGGACCTACACCCTGATTATCCGACTGCGACACAA
TGTGATCAAGACAGGTGTGCGCATGATCAGCCTGTCCTATTCCCGGATCTCCCTGGCCGACATCGCCCAG
AAGCTGCAGCTGGATAGCCCAGAAGATGCAGAGTTCATTGTCGCCAAGGCCATCCGGGACGGCGTGATTG
AGGCCAGCATCAATCACGAGAAGGGATACGTCCAATCCAAAGAGATGATTGACATCTATTCCACCCGGGA
GCCCCAGCTGGCCTTCCACCAGCGCATCTCCTTCTGTCTGGACATCCACAACATGTCTGTCAAGGCCATG
CGCTTTCCTCCCAAATCCTACAACAAGGACCTGGAGTCTGCAGAGGAGCGGCGAGAGCGGGAGCAGCAGG
ACCTGGAGTTTGCCAAGGAGATGGCGGAGGATGACGACGACAGCTTCCCCTGA

Translation (530 aa):
MKQEGSARRRGADKAKPPPGGEQEPPPPAPQDVEMKEEAAAGSGSTGEGDGKAAATEHSQRELDTVTLED
IKEHVRQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNNATRDFLLPFLEEPMDTEAD
LQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYH
ARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNE
WARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLK
RSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQ
KLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAM
RFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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