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Report for CCDS25328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25328.1 Public Mus musculus 11 Psmb3 23 108 98 CCDS HistoryNCBI Gene:26446Re-query CCDS DB by CCDS ID:25328.1Re-query CCDS DB by GeneID:26446See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103147.4 ENSMUSP00000099436.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103147.4Link to Ensembl Protein Viewer:ENSMUSP00000099436.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103147Re-query CCDS DB by Protein ID:ENSMUSP00000099436
Original member Current member NCBI NM_011971.4 NP_036101.1 Accepted alive Link to Nucleotide Sequence:NM_011971.4Link to Protein Sequence:NP_036101.1Re-query CCDS DB by Nucleotide ID:NM_011971Re-query CCDS DB by Protein ID:NP_036101Link to BLAST:NP_036101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036101.1 205 Q9R1P1 205 100% 0 0

Chromosomal Locations for CCDS 25328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97703488 97703490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97703788 97703972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97706798 97706905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97711102 97711279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97712437 97712531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97713393 97713441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTCTATTATGTCCTATAATGGAGGGGCCGTCATGGCCATGAAGGGAAAGAACTGTGTGGCCATCGCTG
CAGACAGACGTTTCGGGATCCAGGCCCAGATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGTGA
CAGGCTCTACATAGGCCTGGCCGGCCTGGCCACTGACGTCCAGACAGTTGCCCAGCGTCTCAAGTTCCGA
CTGAACTTGTATGAGCTGAAAGAAGGTCGACAGATCAAGCCTTACACCCTCATGAGCATGGTGGCCAACC
TCCTGTATGAGAAGCGGTTCGGTCCCTACTACACAGAGCCTGTCATTGCTGGCCTGGACCCGAAGACCTT
CAAGCCCTTCATTTGCTCTCTGGACCTCATTGGCTGTCCCATGGTGACTGATGACTTTGTAGTCAGTGGT
ACCTGCTCCGAACAAATGTATGGGATGTGTGAGTCTCTCTGGGAGCCCAACATGGATCCAGAACACCTGT
TTGAAACCATTTCTCAGGCCATGCTGAACGCGGTGGACCGGGATGCCGTGTCGGGCATGGGCGTCATCGT
CCACGTCATTGAGAAAGACAAGATCACCACCAGGACGCTGAAGGCCCGGATGGACTAA

Translation (205 aa):
MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFR
LNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG
TCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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