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Report for CCDS25271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25271.1 Public Mus musculus 11 Itga3 23 108 98 CCDS HistoryNCBI Gene:16400Re-query CCDS DB by CCDS ID:25271.1Re-query CCDS DB by GeneID:16400See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001548.13 ENSMUSP00000001548.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001548.13Link to Ensembl Protein Viewer:ENSMUSP00000001548.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001548Re-query CCDS DB by Protein ID:ENSMUSP00000001548
Original member Current member NCBI NM_013565.3 NP_038593.1 Accepted alive Link to Nucleotide Sequence:NM_013565.3Link to Protein Sequence:NP_038593.1Re-query CCDS DB by Nucleotide ID:NM_013565Re-query CCDS DB by Protein ID:NP_038593Link to BLAST:NP_038593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038593.1 1053 Q62470-1 1053 100% 0 0

Chromosomal Locations for CCDS 25271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95046480 95046590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95046921 95047046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95051452 95051550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95052444 95052557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95053225 95053347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95053732 95053914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95054075 95054177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95055696 95055773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95055857 95055936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95056441 95056512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95056704 95056851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057084 95057181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057271 95057420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95057967 95058103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95058212 95058279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059324 95059410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059556 95059692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95059779 95059867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95061878 95062074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95062553 95062763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95063135 95063221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95065763 95066012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95068225 95068304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95068712 95068839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95076131 95076336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3162 nt):
ATGGGCCCCGGCCCCTGCCGCGTGCCCCGCGCCCCTGGCTGGCTGCTCCGCGCTCTGGCCTTGATGGTGG
CGGCTTGCGGCCGGGTCGCCTTCGCCTTCAACCTGGACACCCGATTCCTGGTGGTGAAGGAGGCGGTGAA
CCCCGGTAGCCTCTTCGGCTACTCGGTCGCCCTCCATCGGCAGACTGAGCGACAACAGCGCTACCTCCTT
CTGGCCGGGGCTCCCCGGGACCTCGCTGTGGGTGATGACTATACCAACCGGACTGGTGCTGTGTACCTGT
GTCCCCTCACGGCCCACAAGGACGACTGTGAACGGATGGACATTTCAGAGAAAAGTGACCCTGACCATCA
CATTATTGAGGATATGTGGCTTGGAGTGACTGTGGCCAGCCAGGGCCCTGCAGGTAGAGTCCTGGTCTGT
GCCCATCGGTACACCAAGGTGCTGTGGTCTGGGCTAGAAGACCAGCGGCGCATGGTGGGCAAGTGCTATG
TGCGTGGCAATGACCTACAGCTCGACCCCGGCGATGACTGGCAGACATACCACAACGAGATGTGTAACAG
CAACACTGACTACTTGCAGACCGGCATGTGCCAGCTGGGCACCAGCGGCGGCTTCACCCAGAACACCGTA
TACTTCGGTGCCCCTGGTGCCTACAACTGGAAAGGAAACAGCTACATGATTCAGCGGAAGGACTGGGATT
TATCTGAATATAGCTACAGGGGCTCAGAGGAGCAAGGAAACCTTTATATTGGGTACACGGTGCAGGTAGG
CAACGCCATCCTACATCCCACGGACATCATCACTGTTGTGACGGGTGCCCCACGGCACCAACATATGGGC
GCTGTCTTCTTGCTGAAGCAAGAGTCAGGTGGAGACCTGCAGAGGAAGCAGGTGCTGAAGGGCACGCAGG
TGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGGGTGGCAGGACCTCCTGGT
GGGTGCTCCCTACTACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCG
GGCGCATCCTTCCCTGATCAACCTTCCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTGGCATCTCTA
TAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGGACATCGCTGTGGGAGCCCCATTTGAGGGCTT
GGGCAAAGTCTACATCTACCACAGCAGCTCCGGGGGGCTCCTCAGGCAGCCCCAGCAGATAATCCATGGA
GAGAAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTGGATGAAA
ACCTTTACCCAGACCTGCTAGTAGGGAGCCTGTCGGACCACATCGTGCTGCTGCGGGCCCGGCCTGTCAT
CAATATCCTCCATAGGACCTTGGTGGCCAGGCCAGCTGTGTTGGACCCTGCGCTTTGTACAGCTACCTCC
TGTGTTCAGGTGGAGCTGTGTTTTGCCTACAACCAGAGCGCTGGGAACCCCAACTACAGGCGGAACATCA
CCCTGGCTTACACACTGGAGGCTGACAGGGACCGACGCCCACCCAGGCTCCGATTTGCCCGCAGCCAGTC
ATCTGTCTTCCACGGCTTCTTCTCCATGCCAGAGACACATTGCCAGACACTGGAGTTACTGCTGATGGAC
AATGTTCGCGATAAACTCCGTCCTATCGTCATTGCCATGAACTACTCCTTACCTCTGCGCATGCCTGATC
GCCTCAAGCTCGGCTTGCGGTCTCTGGATGCCTACCCAGTCCTCAACCAGGCACAGGCTATGGAGAATCA
CACTGAGGTCCACTTCCAGAAAGAGTGCGGGCCAGACAACAAGTGCGACAGCAACCTGCAGATGCGAGCA
GCCTTCCTGTCTGAGCAGCTGCAGCCTCTAAGCAGGCTCCAGTACAGCAGAGACACTAAGAAACTGTTTT
TGAGCATCAATGTGACCAATTCACCGAGCAGCCAACGGGCTGGGGAAGATGCGCATGAGGCATTGCTCAC
CCTAGAGGTGCCATCCGCCCTGCTACTGTCCTCCGTGCGCCCGTCTGGGACCTGCCAAGCTAATAACGAG
ACCATCCTGTGTGAGCTAGGAAACCCCTTCAAACGGAACCAGAGGATGGAGCTGCTCATTGCCTTTGAGG
TCATCGGGGTAACGTTGCACACGAGGGACCTCCCAGTACTTCTTCAGCTGTCCACGTCGAGTCACCAGGA
CAACTTGCAGCCCGTACTCCTGACTTTGCAGGTGGACTACACCCTCCAGGCCTCGCTCAGCTTAATGAAT
CATCGGTTGCAGAGCTTCTTTGGTGGCACAGTGATGGGTGAGGCTGCCATGAAAACTGCGGAGGATGTGG
GAAGTCCCCTGAAATATGAATTCCAGGTGAGCCCAGTGGGAGATGGGCTGGCAGCCTTGGGCACACTGGT
TCTAGGTCTGGAGTGGCCCTATGAAGTTACCAATGGCAAGTGGCTGCTGTACCCCACGGAGATCACCATC
CATAGCAATGGTTCCTGGCCCTGCCAGCCGTCTGGAAACCTTGTCAACCCTCTCAACCTTACTCTCTCTG
ACCCTGGAGTCACACCACTGTCGCCACAGCGCCGCCGGCGGCAACTGGATCCAGGGGGAGACCAGAGTTC
CCCGCCTGTCACACTAGCTGCTGCCAAAAAAGCCAAGTCTGAGACTGTGTTGACCTGCTCCAATGGCCGT
GCCCGCTGTGTGTGGCTGGAGTGCCCCCTTCCAGACACCTCCAACATTACCAATGTGACCGTGAAAGCAC
GGGTGTGGAACAGCACCTTCATTGAGGACTACAAAGACTTTGACAGAGTCAGGGTAGATGGCTGGGCTAC
CCTGTTCCTGAGAACCAGCATCCCTACCATCAACATGGAGAACAAGACCACATGGTTCTCTGTGGACATT
GACTCAGAGCTGGTGGAGGAGCTGCCGGCTGAGATTGAGCTGTGGTTGGTGCTTGTGGCCGTGGGTGCTG
GGTTGCTGCTGCTGGGGCTCATCATCCTCCTCTTGTGGAAGTGCGGCTTCTTCAAGCGAGCCCGCACTCG
TGCCCTGTATGAAGCTAAGAGGCAGAAGGCTGAGATGAAGAGCCAGCCGTCAGAGACAGAAAGGCTGACC
GACGACTACTGA

Translation (1053 aa):
MGPGPCRVPRAPGWLLRALALMVAACGRVAFAFNLDTRFLVVKEAVNPGSLFGYSVALHRQTERQQRYLL
LAGAPRDLAVGDDYTNRTGAVYLCPLTAHKDDCERMDISEKSDPDHHIIEDMWLGVTVASQGPAGRVLVC
AHRYTKVLWSGLEDQRRMVGKCYVRGNDLQLDPGDDWQTYHNEMCNSNTDYLQTGMCQLGTSGGFTQNTV
YFGAPGAYNWKGNSYMIQRKDWDLSEYSYRGSEEQGNLYIGYTVQVGNAILHPTDIITVVTGAPRHQHMG
AVFLLKQESGGDLQRKQVLKGTQVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKEEVGGAVYVFMNQA
GASFPDQPSLLLHGPSRSAFGISIASIGDINQDGFQDIAVGAPFEGLGKVYIYHSSSGGLLRQPQQIIHG
EKLGLPGLATFGYSLSGKMDVDENLYPDLLVGSLSDHIVLLRARPVINILHRTLVARPAVLDPALCTATS
CVQVELCFAYNQSAGNPNYRRNITLAYTLEADRDRRPPRLRFARSQSSVFHGFFSMPETHCQTLELLLMD
NVRDKLRPIVIAMNYSLPLRMPDRLKLGLRSLDAYPVLNQAQAMENHTEVHFQKECGPDNKCDSNLQMRA
AFLSEQLQPLSRLQYSRDTKKLFLSINVTNSPSSQRAGEDAHEALLTLEVPSALLLSSVRPSGTCQANNE
TILCELGNPFKRNQRMELLIAFEVIGVTLHTRDLPVLLQLSTSSHQDNLQPVLLTLQVDYTLQASLSLMN
HRLQSFFGGTVMGEAAMKTAEDVGSPLKYEFQVSPVGDGLAALGTLVLGLEWPYEVTNGKWLLYPTEITI
HSNGSWPCQPSGNLVNPLNLTLSDPGVTPLSPQRRRRQLDPGGDQSSPPVTLAAAKKAKSETVLTCSNGR
ARCVWLECPLPDTSNITNVTVKARVWNSTFIEDYKDFDRVRVDGWATLFLRTSIPTINMENKTTWFSVDI
DSELVEELPAEIELWLVLVAVGAGLLLLGLIILLLWKCGFFKRARTRALYEAKRQKAEMKSQPSETERLT
DDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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