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Report for CCDS25204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25204.1 Public Mus musculus 11 Cltc 23 108 98 CCDS HistoryNCBI Gene:67300Re-query CCDS DB by CCDS ID:25204.1Re-query CCDS DB by GeneID:67300See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103186.10 ENSMUSP00000099475.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103186.10Link to Ensembl Protein Viewer:ENSMUSP00000099475.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103186Re-query CCDS DB by Protein ID:ENSMUSP00000099475
Original member Current member NCBI NM_001003908.2 NP_001003908.1 Accepted alive Link to Nucleotide Sequence:NM_001003908.2Link to Protein Sequence:NP_001003908.1Re-query CCDS DB by Nucleotide ID:NM_001003908Re-query CCDS DB by Protein ID:NP_001003908Link to BLAST:NP_001003908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003908.1 1675 Q68FD5 1675 100% 0 0

Chromosomal Locations for CCDS 25204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86695566 86695690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86697265 86697340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86702209 86702430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86702601 86702771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86703664 86703774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86703871 86704002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86704080 86704229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86704640 86704807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86704888 86704995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86705146 86705310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86705973 86706130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86706667 86706859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86707052 86707235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86707470 86707615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86708950 86709072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86711341 86711575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86711847 86711989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86712581 86712706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86717898 86718061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86719186 86719366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86719459 86719623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86720250 86720387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86721575 86721697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86722175 86722327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86725071 86725271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86726255 86726452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86730211 86730384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86730718 86730831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86732505 86732666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86733576 86733844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86737071 86737278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86757248 86757289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5028 nt):
ATGGCCCAGATTCTGCCCATTCGCTTTCAGGAGCATCTCCAGCTCCAGAACCTGGGTATCAACCCAGCAA
ACATTGGCTTCAGTACCTTGACTATGGAGTCAGACAAATTCATCTGCATTAGAGAAAAAGTGGGAGAGCA
GGCCCAGGTGGTAATCATTGATATGAATGATCCAAGTAATCCAATTCGAAGACCAATCTCAGCAGACAGT
GCCATCATGAATCCTGCCAGCAAAGTGATTGCACTGAAAGCTGGCAAAACTCTTCAGATATTTAACATTG
AAATGAAAAGTAAAATGAAGGCCCATACCATGACTGATGATGTCACCTTCTGGAAATGGATCTCTTTGAA
TACGGTTGCTCTTGTTACGGATAATGCAGTTTATCACTGGAGTATGGAAGGAGAGTCTCAGCCAGTGAAA
ATGTTTGATCGTCATTCTAGCCTCGCAGGATGCCAGATCATCAATTACCGTACAGATGCAAAGCAGAAAT
GGTTGCTTCTCACTGGCATATCTGCACAGCAAAATCGTGTGGTTGGAGCTATGCAGCTGTATTCTGTAGA
TAGGAAAGTTTCTCAGCCTATTGAAGGGCATGCAGCTAGTTTTGCACAATTTAAGATGGAAGGAAATGCA
GAAGAATCAACATTATTTTGTTTTGCTGTGCGGGGTCAGGCAGGAGGAAAGTTACATATCATTGAAGTTG
GTACCCCACCCACAGGGAATCAACCCTTCCCAAAGAAGGCAGTGGATGTTTTCTTTCCTCCAGAAGCACA
AAATGACTTTCCTGTTGCAATGCAGATCAGTGAAAAGCATGATGTGGTGTTCTTGATTACCAAGTATGGT
TATATTCACCTCTATGATCTTGAGACTGGCACGTGCATCTACATGAACAGAATCAGCGGAGAAACCATCT
TCGTCACTGCACCTCATGAAGCCACAGCTGGAATAATAGGAGTCAACAGAAAGGGACAGGTCCTGTCAGT
TTGTGTGGAAGAGGAGAACATAATTCCTTATATCACCAATGTCCTACAAAATCCTGACTTGGCTCTGAGA
ATGGCTGTGCGGAACAACTTAGCTGGTGCTGAAGAACTCTTTGCCCGGAAATTTAATGCTCTCTTCGCCC
AGGGAAACTACTCAGAGGCTGCAAAGGTGGCTGCTAATGCTCCAAAGGGAATCCTTCGTACTCCAGATAC
CATCCGTCGATTCCAGAGTGTCCCAGCTCAGCCAGGTCAAACGTCACCTCTACTTCAGTATTTCGGAATC
CTTTTGGACCAGGGCCAGCTGAACAAATACGAGTCCTTAGAGTTATGTAGACCTGTACTTCAGCAAGGGC
GGAAACAGCTTTTGGAGAAATGGCTGAAAGAAGATAAGCTGGAATGTTCTGAAGAACTGGGTGATCTCGT
TAAATCTGTGGACCCAACATTAGCACTGAGTGTTTACCTCAGGGCCAATGTACCTAATAAAGTCATCCAG
TGCTTTGCAGAGACAGGCCAAGTCCAGAAGATTGTTTTATATGCTAAAAAAGTTGGCTATACTCCAGACT
GGATCTTTCTCCTGAGAAATGTCATGCGGATCAGTCCAGATCAAGGACAGCAGTTTGCTCAAATGTTAGT
TCAGGATGAAGAGCCTCTTGCTGATATCACCCAGATTGTGGATGTCTTTATGGAATACAATCTAATCCAA
CAATGTACTGCCTTCTTACTTGATGCTTTGAAGAATAATCGTCCCTCTGAAGGTCCTTTGCAGACGCGAT
TGCTTGAGATGAACCTTATGCACGCACCTCAAGTTGCAGATGCCATTCTCGGGAATCAGATGTTCACCCA
CTATGACCGGGCTCATATCGCCCAGCTGTGTGAGAAGGCGGGCCTGCTGCAGCGTGCATTAGAACACTTC
ACCGATTTATATGACATAAAACGTGCAGTTGTTCATACCCATCTTCTTAACCCTGAGTGGTTAGTGAATT
ACTTTGGGTCCTTATCAGTTGAAGATTCCCTAGAATGCCTCAGAGCCATGCTGTCAGCTAATATTCGTCA
AAATCTACAGATCTGTGTTCAGGTGGCTTCTAAATATCACGAACAGCTGTCAACTCAGTCTCTGATTGAG
CTCTTTGAATCATTCAAGAGTTTTGAAGGTCTCTTTTATTTTCTGGGGTCCATTGTTAACTTTAGTCAGG
ACCCAGATGTGCACTTTAAATATATTCAGGCGGCTTGCAAGACTGGGCAAATCAAAGAAGTGGAAAGAAT
CTGCAGAGAAAGCAACTGCTATGATCCCGAGCGAGTCAAGAATTTTCTCAAGGAGGCAAAACTAACAGAT
CAGTTGCCACTTATCATTGTCTGTGATCGGTTTGACTTTGTCCATGACCTGGTGCTGTATTTATATAGAA
ACAATCTTCAGAAGTATATAGAGATATATGTCCAGAAGGTAAATCCAAGTCGACTTCCTGTGGTTATTGG
AGGATTGCTGGATGTTGACTGCTCTGAAGATGTCATTAAAAATTTGATTCTTGTTGTGAGAGGTCAATTC
TCTACTGATGAGCTTGTTGCTGAAGTCGAGAAAAGAAACAGATTGAAGCTGCTTCTTCCTTGGCTTGAGG
CCAGAATTCATGAGGGCTGTGAGGAGCCTGCTACTCACAATGCACTTGCCAAAATATACATTGACAGTAA
CAACAACCCAGAGAGATTTCTTCGTGAAAACCCTTATTATGACAGTCGTGTTGTTGGGAAGTACTGTGAG
AAGAGAGACCCCCATCTGGCTTGTGTTGCTTATGAACGTGGCCAGTGTGACCTGGAGCTCATCAATGTTT
GCAATGAGAATTCCCTCTTCAAAAGCCTTTCTCGCTACTTAGTCCGTCGAAAGGATCCAGAATTGTGGGG
TAGTGTGCTACTGGAAAGCAATCCATACAGAAGACCGTTAATTGACCAGGTTGTACAGACAGCCTTGTCT
GAAACTCAGGACCCAGAAGAAGTGTCAGTAACTGTGAAGGCTTTTATGACAGCAGATCTTCCTAATGAGC
TCATTGAACTGCTGGAGAAAATCGTTCTTGATAACTCCGTATTCAGTGAGCACAGGAATCTGCAAAATCT
CCTCATCCTCACTGCAATTAAGGCTGACCGAACACGTGTTATGGAGTATATTAACCGCCTGGATAATTAT
GATGCTCCAGATATTGCCAACATTGCCATCAGCAATGAGCTGTTTGAAGAGGCATTTGCTATTTTCCGGA
AGTTTGATGTCAATACTTCAGCAGTGCAGGTGTTGATTGAACATATTGGAAACCTGGATCGTGCATATGA
GTTTGCTGAACGCTGCAATGAGCCTGCTGTTTGGAGTCAACTTGCAAAAGCTCAGTTGCAGAAAGGAATG
GTGAAGGAAGCCATTGATTCTTACATCAAAGCAGATGATCCTTCATCTTACATGGAAGTTGTCCAGGCTG
CCAATGCCAGCGGAAACTGGGAAGAATTGGTGAAGTATTTGCAGATGGCACGCAAGAAGGCTCGAGAGTC
CTATGTGGAGACAGAATTGATATTTGCACTGGCTAAAACAAACCGCCTTGCAGAATTAGAAGAGTTCATC
AATGGGCCAAATAATGCTCATATTCAGCAAGTTGGTGACCGTTGTTATGATGAAAAAATGTATGATGCTG
CTAAGTTGTTGTACAATAATGTTTCTAACTTTGGACGCTTGGCATCTACCCTTGTTCACCTTGGCGAGTA
TCAGGCAGCAGTTGATGGTGCCAGAAAAGCTAATAGTACTCGAACATGGAAAGAGGTCTGCTTTGCCTGT
GTAGATGGGAAAGAGTTCCGCCTTGCTCAGATGTGTGGACTCCATATTGTGGTGCATGCAGATGAATTAG
AGGAGCTTATCAACTACTATCAGGATCGTGGATATTTTGAAGAACTCATCACCATGTTGGAGGCAGCCTT
GGGACTGGAGCGAGCTCACATGGGAATGTTCACAGAGCTAGCTATTTTGTATTCTAAATTCAAGCCACAG
AAAATGAGAGAACACCTGGAGTTGTTCTGGTCGAGAGTGAATATTCCTAAGGTGCTGAGAGCTGCAGAAC
AGGCTCATCTCTGGGCAGAGCTGGTGTTTCTGTATGACAAGTACGAAGAGTATGACAATGCCATCATTAC
CATGATGAATCACCCCACCGATGCATGGAAGGAAGGGCAGTTCAAAGACATCATCACCAAGGTGGCTAAT
GTGGAACTGTACTACAAAGCAATCCAGTTCTACTTAGAATTCAAGCCTTTGTTGTTAAATGACTTGCTCA
TGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAGGTAAAACAGCTACCACT
GGTGAAACCATATTTACGCTCAGTGCAGAACCACAACAACAAATCTGTGAATGAATCACTGAACAACCTC
TTTATTACTGAAGAAGATTACCAGGCTCTGCGAACATCAATAGATGCTTATGACAACTTTGACAACATCT
CACTTGCTCAGCGTTTGGAAAAACACGAACTCATTGAATTCAGAAGAATTGCTGCTTATCTCTTCAAAGG
CAACAATCGCTGGAAACAGAGTGTAGAGTTGTGCAAGAAAGACAGCCTTTACAAGGATGCAATGCAGTAT
GCCTCTGAATCTAAAGACACAGAATTGGCTGAAGAGCTCCTACAGTGGTTTTTGCAGGAAGAAAAAAGAG
AATGCTTTGGAGCTTGTCTCTTTACCTGTTATGATCTCTTAAGGCCAGATGTCGTCCTGGAAACCGCATG
GAGACATAATATCATGGATTTCGCCATGCCCTATTTCATCCAGGTCATGAAGGAATATTTGACCAAGGTG
GATAAATTAGATGCTTCGGAGTCGCTGAGAAAAGAAGAAGAACAAGCTACAGAGACACAGCCCATTGTTT
ATGGTCAGCCCCAGCTGATGCTAACAGCAGGACCCAGTGTGGCAGTCCCTCCCCAGGCACCTTTTGGTTA
TGGTTATACTGCACCACCGTATGGGCAGCCACAGCCTGGCTTTGGGTACAGCATGTGA

Translation (1675 aa):
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADS
AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVK
MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA
EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG
YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALR
MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQ
CFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQ
QCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHF
TDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIE
LFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTD
QLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCE
KRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALS
ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY
DAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGM
VKEAIDSYIKADDPSSYMEVVQAANASGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI
NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ
KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN
VELYYKAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNL
FITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQY
ASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKV
DKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGYSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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