NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25136.1 Public Mus musculus 11 Spaca3 23 108 98 CCDS HistoryNCBI Gene:75622Re-query CCDS DB by CCDS ID:25136.1Re-query CCDS DB by GeneID:75622See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103222.3 ENSMUSP00000099511.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103222.3Link to Ensembl Protein Viewer:ENSMUSP00000099511.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103222Re-query CCDS DB by Protein ID:ENSMUSP00000099511
Original member Current member EBI ENSMUST00000103223.7 ENSMUSP00000099512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103223.7Link to Ensembl Protein Viewer:ENSMUSP00000099512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103223Re-query CCDS DB by Protein ID:ENSMUSP00000099512
Original member Current member NCBI NM_001359183.1 NP_001346112.1 Accepted alive Link to Nucleotide Sequence:NM_001359183.1Link to Protein Sequence:NP_001346112.1Re-query CCDS DB by Nucleotide ID:NM_001359183Re-query CCDS DB by Protein ID:NP_001346112Link to BLAST:NP_001346112.1
Original member Current member NCBI NM_029367.1 NP_083643.1 Accepted alive Link to Nucleotide Sequence:NM_029367.1Link to Protein Sequence:NP_083643.1Re-query CCDS DB by Nucleotide ID:NM_029367Re-query CCDS DB by Protein ID:NP_083643Link to BLAST:NP_083643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346112.1 163 Q9D9X8-2 163 100% 0 0
NP_083643.1 163 Q9D9X8-2 163 100% 0 0

Chromosomal Locations for CCDS 25136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80863039 80863225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80863922 80864080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80864512 80864590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80867638 80867704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGAAGCTAGGAGCCGGGCTCCCAGAAGACAGCTGTGCCCGCCTGGGATCACTTGGCTGGCCCTGGCCT
ATCTGCTCAGCTGCCTGCTTGCCTCCAGCAAGGCCAAGGTCTTCAGTCGCTGTGAGCTGGCCAAAGAGAT
GCATGACTTCGGTCTGGATGGCTACCGGGGTTATAACCTGGCTGACTGGGTCTGCCTTGCTTACTACACA
AGTGGCTTCAACACAAATGCTGTGGATCATGAAGCTGATGGAAGCACCAACAATGGCATCTTCCAGATCA
GCAGCCGGAGGTGGTGCAGAACCCTCGCCTCGAATGGCCCCAATCTTTGCAGGATATACTGCACTGATTT
GTTGAACAATGATCTCAAAGATTCTATCGTCTGTGCCATGAAGATAGTTCAAGAACCCCTGGGTCTGGGC
TATTGGGAAGCCTGGAGGCACCACTGCCAGGGCAGGGACCTCAGTGACTGGGTGGATGGCTGTGACTTCT
AG

Translation (163 aa):
MEARSRAPRRQLCPPGITWLALAYLLSCLLASSKAKVFSRCELAKEMHDFGLDGYRGYNLADWVCLAYYT
SGFNTNAVDHEADGSTNNGIFQISSRRWCRTLASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPLGLG
YWEAWRHHCQGRDLSDWVDGCDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH