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Report for CCDS25117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25117.1 Public Mus musculus 11 Ksr1 23 108 98 CCDS HistoryNCBI Gene:16706Re-query CCDS DB by CCDS ID:25117.1Re-query CCDS DB by GeneID:16706See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018478.10 ENSMUSP00000018478.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018478.10Link to Ensembl Protein Viewer:ENSMUSP00000018478.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018478Re-query CCDS DB by Protein ID:ENSMUSP00000018478
Original member Current member NCBI NM_013571.3 NP_038599.1 Accepted alive Link to Nucleotide Sequence:NM_013571.3Link to Protein Sequence:NP_038599.1Re-query CCDS DB by Nucleotide ID:NM_013571Re-query CCDS DB by Protein ID:NP_038599Link to BLAST:NP_038599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038599.1 873 Q61097-1 873 100% 0 0

Chromosomal Locations for CCDS 25117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79016185 79016263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79019562 79019695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79020355 79020490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79020682 79020813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79021387 79021520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79025243 79025339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79027417 79027799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79028475 79028523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79029029 79029083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79033218 79033383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79036495 79036601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79036687 79036748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79038152 79038235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79040877 79040937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79043196 79043200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79044845 79045268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79047297 79047444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79074346 79074486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79146055 79146279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGGATAGAGCGGCGTTGCGCGCGGCAGCGATGGGCGAGAAAAAGGAGGGCGGCGGCGGGGGCGCCGCGG
CGGACGGGGGCGCAGGGGCCGCCGTCAGCCGGGCGCTGCAGCAGTGCGGCCAGCTGCAGAAGCTCATCGA
TATCTCCATCGGCAGTCTGCGCGGGCTGCGCACCAAGTGCTCAGTGTCTAACGACCTCACACAGCAGGAG
ATCCGGACCCTAGAGGCAAAGCTGGTGAAATACATTTGCAAGCAGCAGCAGAGCAAGCTTAGTGTGACCC
CAAGCGACAGGACCGCCGAGCTCAACAGCTACCCACGCTTCAGTGACTGGCTGTACATCTTCAACGTGAG
GCCTGAGGTGGTGCAGGAGATCCCCCAAGAGCTCACACTGGATGCTCTGCTGGAGATGGACGAGGCCAAA
GCCAAGGAGATGCTGCGGCGCTGGGGGGCCAGCACGGAGGAGTGCAGCCGCCTACAGCAAGCCCTTACCT
GCCTTCGGAAGGTGACTGGCCTGGGAGGGGAGCACAAAATGGACTCAGGTTGGAGTTCAACAGATGCTCG
AGACAGTAGCTTGGGGCCTCCCATGGACATGCTTTCCTCGCTGGGCAGAGCGGGTGCCAGCACTCAGGGA
CCCCGTTCCATCTCCGTGTCCGCCCTGCCTGCCTCAGACTCTCCGGTCCCCGGCCTCAGTGAGGGCCTCT
CGGACTCCTGTATCCCCTTGCACACCAGCGGCCGGCTGACCCCCCGGGCCCTGCACAGCTTCATCACGCC
CCCTACCACACCCCAGCTACGACGGCACGCCAAGCTGAAGCCACCAAGGACACCCCCACCGCCAAGCCGC
AAGGTCTTCCAGCTGCTCCCCAGCTTCCCCACACTCACACGGAGCAAGTCCCACGAGTCCCAGCTGGGAA
ACCGAATCGACGACGTCACCCCGATGAAGTTTGAACTCCCTCATGGATCCCCACAGCTGGTACGAAGGGA
TATCGGGCTCTCGGTGACGCACAGGTTCTCCACAAAGTCATGGTTGTCACAGGTGTGCAACGTGTGCCAG
AAGAGCATGATTTTTGGCGTGAAGTGCAAACACTGCAGGTTAAAATGCCATAACAAGTGCACAAAGGAAG
CTCCCGCCTGCAGGATCACCTTCCTCCCACTGGCCAGGCTTCGGAGGACAGAGTCTGTCCCGTCAGATAT
CAACAACCCAGTGGACAGAGCAGCAGAGCCCCATTTTGGAACCCTTCCCAAGGCCCTGACAAAGAAGGAG
CACCCTCCAGCCATGAACCTGGACTCCAGCAGCAACCCATCCTCCACCACGTCCTCCACACCCTCATCGC
CGGCACCTTTCCTGACCTCATCTAATCCCTCCAGTGCCACCACGCCTCCCAACCCGTCACCTGGCCAGCG
GGACAGCAGGTTCAGCTTCCCAGACATTTCAGCCTGTTCTCAGGCAGCCCCGCTGTCCAGCACAGCCGAC
AGTACACGGCTCGACGACCAGCCCAAAACAGATGTGCTAGGTGTTCACGAAGCAGAGGCTGAGGAGCCTG
AGGCTGGCAAGTCAGAGGCAGAGGATGACGAGGAGGATGAGGTGGACGACCTCCCCAGCTCCCGCCGGCC
CTGGAGGGGCCCCATCTCTCGAAAGGCCAGCCAGACCAGCGTTTACCTGCAAGAGTGGGACATCCCCTTT
GAACAGGTGGAACTGGGCGAGCCCATTGGACAGGGTCGCTGGGGCCGGGTGCACCGAGGCCGTTGGCATG
GCGAGGTGGCCATTCGGCTGCTGGAGATGGACGGCCACAATCAGGACCACCTGAAGCTGTTCAAGAAAGA
GGTGATGAACTACCGGCAGACGCGGCATGAGAACGTGGTGCTCTTCATGGGGGCCTGCATGAACCCACCT
CACCTGGCCATTATCACCAGCTTCTGCAAGGGGCGGACATTGCATTCATTCGTGAGGGACCCCAAGACGT
CTCTGGACATCAATAAGACTAGGCAGATCGCCCAGGAGATCATCAAGGGCATGGGTTATCTTCATGCAAA
AGGCATCGTGCACAAGGACCTCAAGTCCAAGAATGTCTTCTATGACAACGGCAAAGTGGTCATCACAGAC
TTCGGGCTGTTTGGGATCTCGGGTGTGGTCCGAGAGGAACGGCGCGAGAACCAACTGAAACTGTCACATG
ACTGGCTGTGCTACCTGGCCCCCGAGATCGTACGAGAAATGATCCCGGGGCGGGACGAGGACCAGCTGCC
CTTCTCCAAAGCAGCCGATGTCTATGCATTCGGGACTGTGTGGTATGAACTACAGGCAAGAGACTGGCCC
TTTAAGCACCAGCCTGCTGAGGCCTTGATCTGGCAGATTGGAAGTGGGGAAGGAGTACGGCGCGTCCTGG
CATCCGTCAGCCTGGGGAAGGAAGTCGGCGAGATCCTGTCTGCCTGCTGGGCTTTCGATCTGCAGGAGAG
ACCCAGCTTCAGCCTGCTGATGGACATGCTGGAGAGGCTGCCCAAGCTGAACCGGCGGCTCTCCCACCCT
GGGCACTTTTGGAAGTCGGCTGACATTAACAGCAGCAAAGTCATGCCCCGCTTTGAAAGGTTTGGCCTGG
GGACCCTGGAGTCCGGTAATCCAAAGATGTAG

Translation (873 aa):
MDRAALRAAAMGEKKEGGGGGAAADGGAGAAVSRALQQCGQLQKLIDISIGSLRGLRTKCSVSNDLTQQE
IRTLEAKLVKYICKQQQSKLSVTPSDRTAELNSYPRFSDWLYIFNVRPEVVQEIPQELTLDALLEMDEAK
AKEMLRRWGASTEECSRLQQALTCLRKVTGLGGEHKMDSGWSSTDARDSSLGPPMDMLSSLGRAGASTQG
PRSISVSALPASDSPVPGLSEGLSDSCIPLHTSGRLTPRALHSFITPPTTPQLRRHAKLKPPRTPPPPSR
KVFQLLPSFPTLTRSKSHESQLGNRIDDVTPMKFELPHGSPQLVRRDIGLSVTHRFSTKSWLSQVCNVCQ
KSMIFGVKCKHCRLKCHNKCTKEAPACRITFLPLARLRRTESVPSDINNPVDRAAEPHFGTLPKALTKKE
HPPAMNLDSSSNPSSTTSSTPSSPAPFLTSSNPSSATTPPNPSPGQRDSRFSFPDISACSQAAPLSSTAD
STRLDDQPKTDVLGVHEAEAEEPEAGKSEAEDDEEDEVDDLPSSRRPWRGPISRKASQTSVYLQEWDIPF
EQVELGEPIGQGRWGRVHRGRWHGEVAIRLLEMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPP
HLAIITSFCKGRTLHSFVRDPKTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITD
FGLFGISGVVREERRENQLKLSHDWLCYLAPEIVREMIPGRDEDQLPFSKAADVYAFGTVWYELQARDWP
FKHQPAEALIWQIGSGEGVRRVLASVSLGKEVGEILSACWAFDLQERPSFSLLMDMLERLPKLNRRLSHP
GHFWKSADINSSKVMPRFERFGLGTLESGNPKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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