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Report for CCDS2511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2511.1 Public Homo sapiens 2 SPP2 24 110 108 CCDS HistoryNCBI Gene:6694Re-query CCDS DB by CCDS ID:2511.1Re-query CCDS DB by GeneID:6694See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2511.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000168148.8 ENSP00000168148.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000168148.8Link to Ensembl Protein Viewer:ENSP00000168148.3Re-query CCDS DB by Nucleotide ID:ENST00000168148Re-query CCDS DB by Protein ID:ENSP00000168148
Original member Current member EBI ENST00000373368.5 ENSP00000362466.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373368.5Link to Ensembl Protein Viewer:ENSP00000362466.1Re-query CCDS DB by Nucleotide ID:ENST00000373368Re-query CCDS DB by Protein ID:ENSP00000362466
Original member Current member NCBI NM_006944.3 NP_008875.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006944.3Link to Protein Sequence:NP_008875.1Re-query CCDS DB by Nucleotide ID:NM_006944Re-query CCDS DB by Protein ID:NP_008875Link to BLAST:NP_008875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008875.1 211 Q13103 211 100% 0 0

Chromosomal Locations for CCDS 2511.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 234050787 234050871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234050971 234051095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234058836 234058958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234060369 234060479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234066533 234066587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234067224 234067274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 234069928 234070013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGATTTCCAGAATGGAGAAGATGACGATGATGATGAAGATATTGATTATGTTTGCTCTTGGAATGAACT
ACTGGTCTTGCTCAGGTTTCCCAGTGTACGACTACGATCCATCCTCCTTAAGGGATGCCCTCAGTGCCTC
TGTGGTAAAAGTGAATTCCCAGTCACTGAGTCCGTATCTGTTTCGGGCATTCAGAAGCTCATTAAAAAGA
GTTGAGGTCCTAGATGAGAACAACTTGGTCATGAATTTAGAGTTCAGCATCCGGGAGACTACATGCAGGA
AGGATTCTGGAGAAGATCCCGCTACATGTGCCTTCCAGAGGGACTACTATGTGTCCACAGCTGTTTGCAG
AAGCACCGTGAAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGCTGGTCCTCCTCCACG
TCTGAGTCTTACAGCAGCGAAGAGATGATTTTTGGGGACATGTTGGGATCTCATAAATGGAGAAACAATT
ATCTATTTGGTCTCATTTCAGACGAGTCCATAAGTGAACAATTTTATGATCGGTCACTTGGGATCATGAG
AAGGGTATTGCCTCCTGGAAACAGAAGGTACCCAAACCACCGGCACAGAGCAAGAATAAATACTGACTTT
GAGTAA

Translation (211 aa):
MISRMEKMTMMMKILIMFALGMNYWSCSGFPVYDYDPSSLRDALSASVVKVNSQSLSPYLFRAFRSSLKR
VEVLDENNLVMNLEFSIRETTCRKDSGEDPATCAFQRDYYVSTAVCRSTVKVSAQQVQGVHARCSWSSST
SESYSSEEMIFGDMLGSHKWRNNYLFGLISDESISEQFYDRSLGIMRRVLPPGNRRYPNHRHRARINTDF
E


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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